Locus 5027

Sequence ID X_DroMel_CAF1
Location 13,162,533 – 13,162,642
Length 109
Max. P 0.667446
window8185

overview

Window 5

Location 13,162,533 – 13,162,642
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 78.45
Mean single sequence MFE -35.38
Consensus MFE -19.36
Energy contribution -21.42
Covariance contribution 2.06
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.55
SVM decision value 0.28
SVM RNA-class probability 0.667446
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13162533 109 + 22224390
AGAUGGCUAUCUCAUCGGUAUCAACAAUCUCAUUGAUAUCUUUGUGGAGCUGCAGGCAUCCAUGGAGGCGGAGGCGCAUGCGCAAGCGCAGGCGGAGGCCAUUCAGUCA
.(((((((.((((....(((((((........)))))))(((..((((((.....)).))))..)))...))))(((.((((....)))).)))..)))))))...... ( -40.10)
>DroPse_CAF1 21460 90 + 1
GGAUGGCUACCUGAUCGGCAUCAACAAUCUCAUUGAUAUAUUCGUCGAGCUGCAGGCGGCCCUGGAAAAGGACGCAGA-------------------ACCAUCCAGCAA
((((((....(((.((((((((((........)))))......)))))....)))(((..(((.....))).)))...-------------------.))))))..... ( -27.20)
>DroSec_CAF1 23957 109 + 1
GGAUGGCUAUCUCAUCGGUAUCAACAAUCUCAUUGAUAUCUUUGUGGAGCUGCAGGCAUCCAUGGAGGCGGAGGCGCAUGCGCAAGCGCAGGCGGAGGCCAUUCAGUCA
((((((((.((((....(((((((........)))))))(((..((((((.....)).))))..)))...))))(((.((((....)))).)))..))))))))..... ( -43.40)
>DroSim_CAF1 18875 109 + 1
GGAUGGCUAUCUCAUCGGUAUCAACAAUCUCAUUGAUAUCUUUGUGGAGCUGCAGGCAUCCAUGGAGGCGGAGGCGCAUGCGCAAGCGCAGGCGGAGGCCAUUCAGUCA
((((((((.((((....(((((((........)))))))(((..((((((.....)).))))..)))...))))(((.((((....)))).)))..))))))))..... ( -43.40)
>DroYak_CAF1 23852 97 + 1
GGAUGGCUAUCUCAUCGGUAUCAACAAUCUCAUUGAUAUCUUUGUGGAGCUGCACGCAUCCAUGGAGGCGAAGGCAAA------------AGCGGAGGCCAUUCAGUCA
((((((((.((.(....(((((((........)))))))(((..((((((.....)).))))..)))((....))...------------.).)).))))))))..... ( -33.10)
>DroPer_CAF1 28539 90 + 1
GGAUGGCUACCUGAUUGGCAUCAACAAUCUCAUUGAUAUAUUCGUCGAGCUGCAGGCGGCCCUGGAAAAGGACGCAGA-------------------ACCAUCCAGCAA
((((((....(((.((((((((((........)))))......)))))....)))(((..(((.....))).)))...-------------------.))))))..... ( -25.10)
>consensus
GGAUGGCUAUCUCAUCGGUAUCAACAAUCUCAUUGAUAUCUUUGUGGAGCUGCAGGCAUCCAUGGAGGCGGAGGCACA____________GGCGGAGGCCAUUCAGUCA
((((((((.........(((((((........)))))))(((((((((((.....)).))))))))).............................))))))))..... (-19.36 = -21.42 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:28 2006