Locus 5026

Sequence ID X_DroMel_CAF1
Location 13,162,175 – 13,162,268
Length 93
Max. P 0.558884
window8184

overview

Window 4

Location 13,162,175 – 13,162,268
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 84.38
Mean single sequence MFE -25.98
Consensus MFE -17.28
Energy contribution -17.86
Covariance contribution 0.58
Combinations/Pair 1.08
Mean z-score -1.75
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.558884
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13162175 93 - 22224390
AUGACAAGCGCAGGGAAUCCCC------AAGUUAAUGGCAUUCAACUGGGCAUGCUUG-GCUAAUUUGAAUACCCACCAAAAUAUGUGGGUGACCGCUGA
......(((...(((....)))------........(((((((((.(((.((....))-.)))..))))))((((((........))))))).))))).. ( -25.20)
>DroSec_CAF1 23629 92 - 1
GAGACGAGCGCAGGGAAUCCCC------AAGUUAAUGCCAUUUAACUGGGCAUGCUU--GCUAAUUUGAAUACCCACCAAAAUAUGUGGGUGACCGCUGA
......((((((((..((.(((------(.(((((......))))))))).)).)))--)).........(((((((........)))))))...))).. ( -29.50)
>DroSim_CAF1 18532 92 - 1
GAGACGAGCGCAGGGAAUCCCC------AAGUUAAUGCCAUUCAACUGGGCAUGCUU--GCUCAUUUGAAUACCCACCAAAAUAUGUGGGUGACCGCUGA
......((((..(((....)))------..(((......((((((.((((((....)--))))).))))))((((((........))))))))))))).. ( -30.90)
>DroEre_CAF1 24681 95 - 1
CAAAAAAGCGCAGGGAAUCCCC-----AAAGUUAAUGCCAUUCAACUGGGCAUGUUUUUGCUAAUUUGAAUACCCACCAAUAUAUGUGGGUGACCGCUGA
......((((..(((....)))-----...(((......((((((...((((......))))...))))))((((((........))))))))))))).. ( -26.80)
>DroYak_CAF1 23496 90 - 1
ACAAACAGCGCAGUGAAUCCCCUCCCACAAGUUAAUGCCAUUCGA-------UGCUUU---GAAUUUGAAUACGCACCAAAAUAUGUGGAUGACCGCUGA
.....(((((....((......))(((((.(((..(((.((((((-------......---....))))))..)))....))).))))).....))))). ( -17.50)
>consensus
AAGACAAGCGCAGGGAAUCCCC______AAGUUAAUGCCAUUCAACUGGGCAUGCUU__GCUAAUUUGAAUACCCACCAAAAUAUGUGGGUGACCGCUGA
......((((..(((....)))........(((......((((((...(((........)))...))))))((((((........))))))))))))).. (-17.28 = -17.86 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:27 2006