Locus 5024

Sequence ID X_DroMel_CAF1
Location 13,160,457 – 13,160,547
Length 90
Max. P 0.755053
window8182

overview

Window 2

Location 13,160,457 – 13,160,547
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.20
Mean single sequence MFE -38.44
Consensus MFE -23.51
Energy contribution -24.60
Covariance contribution 1.09
Combinations/Pair 1.10
Mean z-score -2.49
Structure conservation index 0.61
SVM decision value 0.49
SVM RNA-class probability 0.755053
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13160457 90 + 22224390
GUGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCUUGAAUUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU
((((((.(((((((------------((.((((..(((....)))..))))))))))))).(((((....)))))....)).(((....)))))))...... ( -37.50)
>DroSec_CAF1 21975 90 + 1
GCGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU
(((((..(((((((------------((.......(((....)))......))))))))).(((((....))))).))))).(((....))).......... ( -37.92)
>DroSim_CAF1 16875 90 + 1
GCGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU
(((((..(((((((------------((.......(((....)))......))))))))).(((((....))))).))))).(((....))).......... ( -37.92)
>DroEre_CAF1 22604 90 + 1
GUGAGCAUGUGGCC------------CACAAUUGUGGCCUGCGUUUAAACUUGGGCCGAAAGCUGUCGCAGCAGCAUUCGCUGCCCCUCGGCUCACCCACCU
(((((((((..(.(------------(((....)))).)..)))........((((((((.(((((....))))).))))..))))....))))))...... ( -37.90)
>DroYak_CAF1 21886 90 + 1
GUGAGCAUGUGGCC------------CACAAUUGUGGGCUGCGCUUAAAUCUGGGACGCAAGCUAUCGCAGCAGCAUUCGCUGCCACUGGGCUCACCCAGCA
((((((..((((((------------(((....))))))((((((((....)))).)))).((....)).(((((....))))))))...))))))...... ( -40.10)
>DroAna_CAF1 24925 102 + 1
GGGAUCAUGUGUCCGGCACUCAUAUCCAGAACGGCGGCCUCCGGCUGAGUCUGGGCCGGAAACUGUCCCAUCAGUACUCCGUGCCACUUGGCUCGCCCACCU
((((.((.((.((((((........(((((....(((((...)))))..))))))))))).))))))))..........((.(((....))).))....... ( -39.30)
>consensus
GUGAGCAUGUGGCC____________CACAAUUGUGGCCUGCGCCUGAACUUGGGCCGCAAGCUGUCGCAACAGCAUUCGCUGCCCCUGGGCUCACCCACCU
..((((..(.(((..................(((((((((............)))))))))((((......)))).......))).)...))))........ (-23.51 = -24.60 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006