Locus 5023

Sequence ID X_DroMel_CAF1
Location 13,148,960 – 13,149,051
Length 91
Max. P 0.958525
window8181

overview

Window 1

Location 13,148,960 – 13,149,051
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -28.15
Consensus MFE -18.47
Energy contribution -20.00
Covariance contribution 1.53
Combinations/Pair 1.13
Mean z-score -2.08
Structure conservation index 0.66
SVM decision value 1.49
SVM RNA-class probability 0.958525
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13148960 91 - 22224390
---CUUGUUGACUUUGGAACGGCACUCGGGCGACUGAGG-CAUCGCCGUUACAGCGGCAACAAGCCAAGCU-AUCCGGCUGCUAUCCA-ACUAACAA-
---..(((((...(((((..(((.(((((....))))).-....(((((....))))).....))).((((-....))))....))))-).))))).- ( -32.80)
>DroGri_CAF1 9880 88 - 1
---CUUGUUGACUUUGGAACGGCGCACGAGCAACUAAACUGAACGCUUUGCCGGCAGCCACAAGUAAAGCUUCCACAG---AUUGCCA-AC-AGCG--
---.(((((((((((((..(((((...((((.............)))))))))....))).))))...((.((....)---)..))))-))-))..-- ( -20.32)
>DroSec_CAF1 10597 88 - 1
---CUUGUUGACUUUGGAACGGCACUCGGGCGACUGAGG-CAUCGCCGUUACAGCGGCAACAAGCAAAGCU-AUCCGG---CUAUCCA-ACUAACAA-
---..(((((...(((((...((.(((((....))))))-)...((((....(((.((.....))...)))-...)))---)..))))-).))))).- ( -29.70)
>DroEre_CAF1 10861 88 - 1
---CUUGUUGACUUUGGAACGGCACUCGGGCAACUGAGG-CAUCGCCGUUACAGCGGCAACAAGCAAAGCU-AUCCGG---CUAUCCA-ACUAACAA-
---..(((((...(((((...((.(((((....))))))-)...((((....(((.((.....))...)))-...)))---)..))))-).))))).- ( -30.70)
>DroYak_CAF1 10003 89 - 1
---CUUGUUGACUUUGGAACGGCACUCGGGCAACUGAGG-CGACGCCGUUACAGCGGCAACAAGCAAAGCU-AUCCGG---CUAUCCAAACUAACAA-
---..(((((..((((((...((.(((((....))))))-)...((((....(((.((.....))...)))-...)))---)..)))))).))))).- ( -32.00)
>DroAna_CAF1 10579 83 - 1
AUACUUGUUGACUUUGGAACGGCGCUCGGGCAACUGAGA-AAUGCGACUCGCGGCGGCAACAAGUAAAGCU-C-------------CAAACCAAAAAA
.(((((((((.........((.(.(((((....))))).-...(((...)))).)).))))))))).....-.-------------............ ( -23.40)
>consensus
___CUUGUUGACUUUGGAACGGCACUCGGGCAACUGAGG_CAUCGCCGUUACAGCGGCAACAAGCAAAGCU_AUCCGG___CUAUCCA_ACUAACAA_
...(((((((.(((((.((((((.(((((....)))))......)))))).))).))))))))).................................. (-18.47 = -20.00 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:24 2006