| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,144,210 – 13,144,327 |
| Length | 117 |
| Max. P | 0.543160 |
| Location | 13,144,210 – 13,144,327 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.72 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -14.99 |
| Energy contribution | -15.30 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.543160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13144210 117 + 22224390 AUUACUUAAUGUAUAUUUAAAGCCGCAAUAAGAUACUGU---CUAUAUGGGGCAUUGUCAAUAAUACACUGAUAAAAAGUAUAAAUUAAGAAAAGCUGUGACAGUGAAAAGUAUUGUACA ....((((((.(((((((...(((.((...((((...))---))...)).))).((((((.........)))))).))))))).)))))).......(((.(((((.....)))))))). ( -23.30) >DroSec_CAF1 5697 117 + 1 AUUACUUAAUGUAUAUUUAAAGCCGCAAUAAGAUAGUGU---CUAUAUGGGGAAUUGUCAAUAAUGCACUGAUAAAAAGUAUAAAUUAGGAAAAAGUGUCACAGUGAAAGGCAUUGUACA ....((((((.(((((((....((.((...((((...))---))...)).))..((((((.........)))))).))))))).))))))......(((.((((((.....))))))))) ( -21.20) >DroEre_CAF1 6037 114 + 1 AUUACUUAAUGUAUAUUUAAAACCACAACAAGAUAGUGG---CUAUAUGGGGAAUUGUCAAUAAUACACUGAUAAAAAGUAUAAAUUAAGA-AACGUGUCACAGUGAAAAGUAUUGUA-- ....((((((.(((((((....((((.........))))---............((((((.........)))))).))))))).)))))).-........((((((.....)))))).-- ( -17.30) >DroYak_CAF1 4703 118 + 1 AUUACUUAAUGUAUAUUUAAAACCACAAUAAGAUAGUGUCUUCUAUAUGGGGCAUUGUCAAUAGUACACUGAUAAAUAGUAUAAAUUAAGACAAUGUGUCAGAGUGAAUAGCAUUGUA-- ....((((((.((((((..............(((((((((((......)))))))))))..(((....)))......)))))).))))))(((((((.((.....))...))))))).-- ( -27.30) >consensus AUUACUUAAUGUAUAUUUAAAACCACAAUAAGAUAGUGU___CUAUAUGGGGAAUUGUCAAUAAUACACUGAUAAAAAGUAUAAAUUAAGAAAAAGUGUCACAGUGAAAAGCAUUGUA__ ....((((((.(((((((....((.((.....((((......)))).)).))..((((((.........)))))).))))))).))))))..........((((((.....))))))... (-14.99 = -15.30 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:23 2006