| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,132,067 – 13,132,159 |
| Length | 92 |
| Max. P | 0.794333 |
| Location | 13,132,067 – 13,132,159 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 95.22 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -18.16 |
| Energy contribution | -17.88 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13132067 92 + 22224390 CAAGUUGUGCCUUUUGCGAGAAGAGGACCUAGCAUCUCCUUGCAUCUGCCUGCGAAGGUAAUCUUUACCCUACUUGCAAAUAUUUUAUUUUA ............((((((((.((.((.....(((......)))...(((((....))))).......)))).))))))))............ ( -21.40) >DroSec_CAF1 2124 92 + 1 CAAGUUGUGGCUUUUGCGAGAAGAGGACCUAGCAUCUCCUUGCAUCUGCCUGCGAAGGUAAUCUUUACCCUACUUGCAAAUAUUUUAUUUUA (((((((((((...((((((.(((.(......).))).))))))...))).)))).((((.....))))...))))................ ( -21.70) >DroSim_CAF1 845 92 + 1 CAAGUUGUGCCUUUUGCGAGAAGAGGACCUAGCAUCUCCUUGCAUCUGCCUGCGAAGGUAAUCUUUACCCUACUUGCAAAUAUUUUAUUUUA ............((((((((.((.((.....(((......)))...(((((....))))).......)))).))))))))............ ( -21.40) >DroEre_CAF1 815 92 + 1 GAAGUUGUGCCUUUUGCGAGAAGAGGACCUACCAUCUCCUUACAUCUGCCUGUGAAGGUAAUCUUUACCCUACUUGCAAAUAUUUUAUUUUA (((((.......((((((((..(((((.........))))).....(((((....)))))............))))))))......))))). ( -18.72) >DroYak_CAF1 839 92 + 1 CAAGUUGUGCCUUUUGCGAGAAGAGGACCUAGCAUCUCCUUACAUCUGCCUGUGAAGGUAAUCUUUACCCUACUUGCAAACAAUAUUAUUUA ...(((((.....(((((((..(((((.........))))).....(((((....)))))............))))))))))))........ ( -18.80) >consensus CAAGUUGUGCCUUUUGCGAGAAGAGGACCUAGCAUCUCCUUGCAUCUGCCUGCGAAGGUAAUCUUUACCCUACUUGCAAAUAUUUUAUUUUA ............((((((((.((.((....((.((..(((((((......))).))))..))))...)))).))))))))............ (-18.16 = -17.88 + -0.28)
| Location | 13,132,067 – 13,132,159 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 95.22 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -20.26 |
| Energy contribution | -19.62 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13132067 92 - 22224390 UAAAAUAAAAUAUUUGCAAGUAGGGUAAAGAUUACCUUCGCAGGCAGAUGCAAGGAGAUGCUAGGUCCUCUUCUCGCAAAAGGCACAACUUG ...........((((((..((((((((.....)))))).))..))))))((.((((((.(......).)))))).))..(((......))). ( -20.40) >DroSec_CAF1 2124 92 - 1 UAAAAUAAAAUAUUUGCAAGUAGGGUAAAGAUUACCUUCGCAGGCAGAUGCAAGGAGAUGCUAGGUCCUCUUCUCGCAAAAGCCACAACUUG ................(((((((((((.....))))))....(((...(((.((((((.(......).)))))).)))...)))...))))) ( -21.10) >DroSim_CAF1 845 92 - 1 UAAAAUAAAAUAUUUGCAAGUAGGGUAAAGAUUACCUUCGCAGGCAGAUGCAAGGAGAUGCUAGGUCCUCUUCUCGCAAAAGGCACAACUUG ...........((((((..((((((((.....)))))).))..))))))((.((((((.(......).)))))).))..(((......))). ( -20.40) >DroEre_CAF1 815 92 - 1 UAAAAUAAAAUAUUUGCAAGUAGGGUAAAGAUUACCUUCACAGGCAGAUGUAAGGAGAUGGUAGGUCCUCUUCUCGCAAAAGGCACAACUUC .........((((((((..((((((((.....)))))).))..)))))))).((((((.((.....)))))))).((.....))........ ( -23.00) >DroYak_CAF1 839 92 - 1 UAAAUAAUAUUGUUUGCAAGUAGGGUAAAGAUUACCUUCACAGGCAGAUGUAAGGAGAUGCUAGGUCCUCUUCUCGCAAAAGGCACAACUUG ...........((((((..((((((((.....)))))).))..))))))(..((((((.(......).))))))..)..(((......))). ( -19.90) >consensus UAAAAUAAAAUAUUUGCAAGUAGGGUAAAGAUUACCUUCGCAGGCAGAUGCAAGGAGAUGCUAGGUCCUCUUCUCGCAAAAGGCACAACUUG ...........((((((..((((((((.....)))))).))..))))))((.((((((.(......).)))))).))..(((......))). (-20.26 = -19.62 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:22 2006