Locus 5018

Sequence ID X_DroMel_CAF1
Location 13,128,577 – 13,128,695
Length 118
Max. P 0.982615
window8172

overview

Window 2

Location 13,128,577 – 13,128,695
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -38.92
Consensus MFE -25.08
Energy contribution -27.07
Covariance contribution 2.00
Combinations/Pair 1.21
Mean z-score -3.03
Structure conservation index 0.64
SVM decision value 1.92
SVM RNA-class probability 0.982615
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13128577 118 - 22224390
UGUCGCUGAGGCGUCGCUGCUGUUACUUUC-CAGCUCAUUGUUAU-UUUAUAGGUUGUGUAAUUCAAUCAGAGUUGGAAAGUAUCAUCGCCGUCGACGUCCAGAUAGAUGAUCGCCAUUC
.(((.(((.((((((((.((((.(((((((-((((((..(((...-...)))(((((.......))))).))))))))))))).))..)).).))))))))))...)))........... ( -43.00)
>DroSec_CAF1 6271 119 - 1
CGUCGCUGAGGCGUCGCUGCUGUUACUUUCCCAGCCCAUUGUUAC-GUUAUAAGUUGUGUAAUUCAAUCAAAGCUGGAAAGUAUCGUCGCCGUCGACGUCCAGAUAGAUGAUCGCCAUUC
((((.(((.((((((((.((((.((((((((.(((..((((....-((((((.....)))))).))))....))))))))))).))..)).).))))))))))...)))).......... ( -37.30)
>DroEre_CAF1 19040 111 - 1
CGUCGUAGAGAUGACGGCGAUGUUACUUUC-CAGCCCAUUGUUAC-CUUAUAAGUUGUGUAAUUUAAUCAGAGUUGGAAAGUAUCAUCAUCGU---CGUCCAG----AUGAUCGGCAUUC
((((((...(((((((..((((.(((((((-((((.(...((((.-.(((((.....)))))..))))..).))))))))))).))))..)))---))))...----)))).))...... ( -38.80)
>DroYak_CAF1 6541 112 - 1
CGUCGCAGUGAUGCCGGUGAUGUUACUUGC-CAGCCCAUUGUUACCCUUAUAUGUUGUGUAAUUUAAUCAGAGCUGGAAAGUAUCAUCAUCGU---CGUCCAG----AUGCUCGGCAUUC
.((((.(((((((.((((((((.(((((.(-((((.(...((((...((((((...))))))..))))..).))))).))))).)))))))).---))))...----..))))))).... ( -36.60)
>consensus
CGUCGCAGAGACGUCGCUGAUGUUACUUUC_CAGCCCAUUGUUAC_CUUAUAAGUUGUGUAAUUCAAUCAGAGCUGGAAAGUAUCAUCACCGU___CGUCCAG____AUGAUCGCCAUUC
((((.(((.(((((((((((((.(((((((.((((...(((......(((((.....)))))......))).)))))))))))....))))))))))))))))...)))).......... (-25.08 = -27.07 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:17 2006