Locus 5017

Sequence ID X_DroMel_CAF1
Location 13,127,017 – 13,127,110
Length 93
Max. P 0.767002
window8171

overview

Window 1

Location 13,127,017 – 13,127,110
Length 93
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 74.28
Mean single sequence MFE -32.78
Consensus MFE -15.51
Energy contribution -15.43
Covariance contribution -0.08
Combinations/Pair 1.45
Mean z-score -1.91
Structure conservation index 0.47
SVM decision value 0.52
SVM RNA-class probability 0.767002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13127017 93 + 22224390
UUUCCCAGUGUCCUUAUCCGCUUCAGUCAGC---AGCAGCAGUCCAAGUCGCUGAAUAAUAUCAGUGAGAUGCUGGCUGGUGGUGGCGGCGGUG---GU------
....(((.((((((...((((..((((((((---(((....)).....(((((((......)))))))..))))))))))))).)).)))).))---).------ ( -36.60)
>DroSec_CAF1 4744 93 + 1
UUUCCCAGUGUCCUUAUCCGCUUCAGUCAGC---AGCAGCAGUCCAAGUCGCUGAAUAAUAUCAGUGAGAUGCUGGCUGGUGGUGGAGGCAGUG---GG------
...((((.((((....(((((((((((((((---(((....)).....(((((((......)))))))..)))))))))).)))))))))).))---))------ ( -41.60)
>DroWil_CAF1 4769 90 + 1
UUUCCCAGUGUCCUCAUACGCUUUAGUCAGCUGCAACAGCAAUCCAAAUCGUUGAACAAUAUUAGCGAGAUGCUCGGCACAAAUGGUGG---------G------
...((((((((....))))(((...(((.((((...))))........(((((((......))))))))))....)))........)))---------)------ ( -20.80)
>DroYak_CAF1 4895 96 + 1
UUUCCCAGUGUCCUCAUCCGCUUCAGUCAGC---AGCAGCAGUCCAAGUCACUGAAUAAUAUCAGUGAAAUGCUGGCUGGUGGUGGUGGUGGUGCUGGG------
...(((((..((.(((.((((((((((((((---(.............(((((((......)))))))..)))))))))).)))))))).))..)))))------ ( -45.26)
>DroMoj_CAF1 4610 93 + 1
UUUCCCAGCGUGCUCAUCCGCUACAGCCAGC---AGCAGCAGUCCAAGUCCUUGAACAAUAUACACGACAUGCUCGUCGCGGGCACUG---------CCACAAAG
.......((((((((....((....))..((---.(((((((((......................))).)))).)).)))))))).)---------)....... ( -21.35)
>DroAna_CAF1 5052 96 + 1
UUCCCCAGCGUCCUAAUCCGCUUCAGCCAGC---AGCAGCAGUCCAAGUCCCUCAACAACAUCAGCGAGAUGCUGGGCGGAGGAGGUGGAGGUG---GCUCU---
......(((..((...((((((((..((.((---....)).(((((.((..(((............)))..)))))))))..))))))))))..---)))..--- ( -31.10)
>consensus
UUUCCCAGUGUCCUCAUCCGCUUCAGUCAGC___AGCAGCAGUCCAAGUCGCUGAACAAUAUCAGCGAGAUGCUGGCCGGUGGUGGUGG_GGUG___GG______
....((((((((.......(((...((........)))))........(((((((......)))))))))))))))............................. (-15.51 = -15.43 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:16 2006