| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 13,123,941 – 13,124,050 |
| Length | 109 |
| Max. P | 0.653039 |
| Location | 13,123,941 – 13,124,050 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.32 |
| Mean single sequence MFE | -49.78 |
| Consensus MFE | -23.56 |
| Energy contribution | -25.78 |
| Covariance contribution | 2.23 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653039 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13123941 109 + 22224390 ACAAUCCGAGCAGGGAACUGGGCAGCGGCUGCUCCACGUGGUGGAAUCCUCGGCCAUGCGCCUGGCCUUGGCCAGCACACAGGCGGAACCGUUGCCCGCAGAGAUGAUA---- ...((((..((((....))((((((((((((((...((((((.((....)).)))))).((.((((....)))))).....)))))..))))))))))).).)))....---- ( -48.00) >DroSec_CAF1 1667 109 + 1 ACAGUCCGAGCAGGGAACUGGGCAGCGGCUGCUCCACGUGGUCGAAUCCUCGGCCAUGCGCCUGGCCUUGGCCAGCACCCAGGCGGAACCGCUGCCCGCGGAGAUGAUA---- .((.((((...((....))((((((((((((((...(((((((((....))))))))).((.((((....)))))).....)))))..))))))))).))))..))...---- ( -56.20) >DroEre_CAF1 14396 109 + 1 ACAAGCCGAGCAGGGAACUGGCCAGCGGCUGCUUCACGUGGUGGAAUCCUCGGCCAUGCGCCUGGCCUUGGCCAGCACCCAGGCGGAACCGCUGCCCGCGGAGAUGAUA---- .((..(((.((.(((..((((((((.(((((...(.((((((.((....)).)))))).)..)))))))))))))..))).((((....))))))...)))...))...---- ( -49.50) >DroYak_CAF1 1810 109 + 1 ACAAUCCGAGCAGGGAACUGGCCAGCGGUUGCUUCACGUCGUGGAAUCCUCGGCUAUGCGCCUGGCCCUGGCCAGCACGCAGGCGGAACCGCUGCCGGCAGAGAUGAUG---- ....(((......))).(((((.(((((((.(.((..((((.((...)).))))..((((.(((((....)))))..)))))).).))))))))))))...........---- ( -45.20) >DroMoj_CAF1 1648 105 + 1 CCAACUGGAGCAGGGCACAAGCCAUAAGCUGCUCCACAUUGUCGAAGCCGCCGCGCUGCGACUGGCCACCAGCAGCA-----CCA---UGGCCGCCGGCGAUGGCGAGGCAAG ((...(((((((((((....))).....))))))))((((((((..((.((((.(.(((..((((...))))..)))-----.).---)))).))))))))))....)).... ( -45.10) >DroAna_CAF1 1940 109 + 1 UCAGAAGGAUCAGGGCACUGGCCAGCGACUGCUCCAUGUGGUGGAGUCGUCGGCCAUGCGUCUGGCCCUGGCCAGCACCCAGGCGAGUGGUCAGGGCCUAGAGCAGUUG---- .............(((..(((((.((((((.(.((....)).).)))))).)))))(((.((((((((((((((.(.(....).)..))))))))))).))))))))).---- ( -54.70) >consensus ACAAUCCGAGCAGGGAACUGGCCAGCGGCUGCUCCACGUGGUGGAAUCCUCGGCCAUGCGCCUGGCCUUGGCCAGCACCCAGGCGGAACCGCUGCCCGCAGAGAUGAUA____ ..........(((....)))..(((((((((((...((((((.((....)).)))))).(.(((((....)))))).....)))))..))))))................... (-23.56 = -25.78 + 2.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:11 2006