Locus 5013

Sequence ID X_DroMel_CAF1
Location 13,121,171 – 13,121,291
Length 120
Max. P 0.548021
window8166

overview

Window 6

Location 13,121,171 – 13,121,291
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -45.26
Consensus MFE -37.81
Energy contribution -37.28
Covariance contribution -0.53
Combinations/Pair 1.20
Mean z-score -1.69
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.548021
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13121171 120 + 22224390
AGGUGCUCCAGGUGGUGGCCAACAAUGCCACCGCCUAUUUGCACACGUCGAAGAUCAAGAAGUGGGACAUUUGCGCCGGCGAUGCUAUUCUGCACGCAUUGGGCGGCACAAUGACCACGC
..((((...((((((((((.......))))))))))....)))).................((((..((((((((((.(((.(((......))))))....))).))).)))).)))).. ( -49.80)
>DroPse_CAF1 34602 120 + 1
AGGUGCUCCAGGUGGUGGCUAACAAUGCGACCGCCUACCUGCACACCUCAAAGAUCAAGAAGUGGGAUAUCUGUGCCGGAGAUGCCAUACUGCACGCCCUGGGCGGCACCAUGACCACUC
..((((...(((((((.((.......)).)))))))....))))................(((((.......(((((.....(((......))).(((...)))))))).....))))). ( -41.60)
>DroSec_CAF1 22426 120 + 1
AGGUGCUCCAGGUGGUGGCCAACAAUGCCACCGCCUAUCUGCACACGUCGAAGAUCAAGAAGUGGGACAUAUGCGCCGGCGAUGCCAUUCUGCACGCACUGGGCGGCACAAUGACCUCGC
.((((((((((((((((((.......)))))))))).......(((.((.........)).)))))).....))))).((((.(.((((.(((.(((.....)))))).)))).).)))) ( -48.70)
>DroYak_CAF1 22616 120 + 1
AGGUGCUCCAGGUGGUGGCCAACAAUGCCACUGCCUAUCUGCACACGUCCAAGAUCAAGAAGUGGGACAUUUGUGCCGGCGAUGCCAUUCUGCACGCGUUGGGCGGCACAAUGACCACGC
..((((...(((..(((((.......)))))..)))....)))).................((((..((((.((((((.((((((..........))))).).)))))))))).)))).. ( -48.30)
>DroAna_CAF1 28616 120 + 1
AGGUGCUCCAGGUGGUGGCCAACAAUGCUACCGCCUAUCUGCACACCUCCAAGAUCAAGAAAUGGGACAUCUGUGCCGGAGACGCCAUCCUGCAUGCCCUCGGUGGCACUAUGACGACCC
.((((((((((((((((((.......))))))))))....(((((..(((..............)))....))))).)))).))))........((((......))))............ ( -41.54)
>DroPer_CAF1 35755 120 + 1
AGGUGCUCCAGGUGGUGGCUAACAAUGCGACCGCCUACCUGCACACCUCAAAGAUCAAGAAGUGGGAUAUCUGUGCCGGAGAUGCCAUACUGCACGCCCUGGGCGGCACCAUGACCACUC
..((((...(((((((.((.......)).)))))))....))))................(((((.......(((((.....(((......))).(((...)))))))).....))))). ( -41.60)
>consensus
AGGUGCUCCAGGUGGUGGCCAACAAUGCCACCGCCUAUCUGCACACCUCAAAGAUCAAGAAGUGGGACAUCUGUGCCGGAGAUGCCAUUCUGCACGCCCUGGGCGGCACAAUGACCACGC
.((((((((((((((((((.......)))))))))).......(((.((.........)).)))))).....))))).(((....(((..(((.(((.....))))))..)))....))) (-37.81 = -37.28 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:10 2006