Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,431,160 – 1,431,263 |
Length | 103 |
Max. P | 0.813373 |
Location | 1,431,160 – 1,431,263 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -32.67 |
Energy contribution | -34.00 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.14 |
Structure conservation index | 0.90 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1431160 103 - 22224390 AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU ...........((((((.....))))))..(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))) ( -37.20) >DroSec_CAF1 35891 103 - 1 AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU ...........((((((.....))))))..(((((((((...(((.(((((......))))).))).....(((((((....))))))).....))))))))) ( -37.20) >DroEre_CAF1 32701 97 - 1 AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCU------GAGACUGAGGCUUCAGCUUCAGAAUUUGGCGCUGAU ...........((((((.....))))))..(((((((((....((.(((((......))))------).))(((((((....))))))).....))))))))) ( -34.50) >consensus AUAAUGUUGCCCAGAAAAUGUGUUUUUGAGAUCAGCGUCGCUGUCGCAGUCGUCGCAGGCUGAGGCUGAGACUGAGGCUGAGGCUUCAGAAUUUGGCGCUGAU ...........((((((.....))))))..(((((((((.(.(((.(((((......))))).))).)...(((((((....))))))).....))))))))) (-32.67 = -34.00 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:10 2006