Locus 5003

Sequence ID X_DroMel_CAF1
Location 13,080,321 – 13,080,416
Length 95
Max. P 0.887686
window8149 window8150

overview

Window 9

Location 13,080,321 – 13,080,416
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 88.77
Mean single sequence MFE -37.67
Consensus MFE -32.42
Energy contribution -33.37
Covariance contribution 0.95
Combinations/Pair 1.10
Mean z-score -2.39
Structure conservation index 0.86
SVM decision value 0.95
SVM RNA-class probability 0.887686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13080321 95 + 22224390
AGCUGAUGUGCCGCGCCCGUCUGCAAAAGUUGCUGCCGCAGUUGCAGUGGCUGCAGUUGCUGCAGUUGCAUUUUCGCAGCGGCAACAAGUUCUCA
((((....((((((((.....((((......(((((.(((..(((((...)))))..))).))))))))).....)).))))))...)))).... ( -37.80)
>DroSec_CAF1 29423 86 + 1
AGCUGAUGUGCCGCGCCCGUCUGCAAAAGUUGCUGCCGCAGUUGC---------AGUUGCUGCAGUUGCAUUUUCGCAGCGGCAACAAGUUCUCA
.((.((((.((...)).)))).))....((((((((.(((((...---------....)))))...(((......)))))))))))......... ( -30.20)
>DroEre_CAF1 29397 95 + 1
AGCUGAUGUGCCGCGCCCGACUGCAAAAGUUGCUGCGGCAGUUGCUGCGGCAGUUGCCGCUGCAGUUGCAUUUUCGCAGCGGCAACAAGUUCUCA
((((....(((((((..(((((((....((....)).))))))).)))))))(((((((((((............))))))))))).)))).... ( -45.00)
>consensus
AGCUGAUGUGCCGCGCCCGUCUGCAAAAGUUGCUGCCGCAGUUGC_G_GGC_G_AGUUGCUGCAGUUGCAUUUUCGCAGCGGCAACAAGUUCUCA
((((....((((((((.....((((......(((((.((((((((((...)))))))))).))))))))).....)).))))))...)))).... (-32.42 = -33.37 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 13,080,321 – 13,080,416
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 88.77
Mean single sequence MFE -34.21
Consensus MFE -25.87
Energy contribution -26.20
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.76
SVM decision value -0.05
SVM RNA-class probability 0.508237
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13080321 95 - 22224390
UGAGAACUUGUUGCCGCUGCGAAAAUGCAACUGCAGCAACUGCAGCCACUGCAACUGCGGCAGCAACUUUUGCAGACGGGCGCGGCACAUCAGCU
..((....(((.(((((.((.....(((((((((.(((..(((((...)))))..))).))))......))))).....))))))))))....)) ( -33.60)
>DroSec_CAF1 29423 86 - 1
UGAGAACUUGUUGCCGCUGCGAAAAUGCAACUGCAGCAACU---------GCAACUGCGGCAGCAACUUUUGCAGACGGGCGCGGCACAUCAGCU
(((....((((..(((((((((((.(((..((((((.....---------....))))))..)))..)))))))).)))..))))....)))... ( -28.10)
>DroEre_CAF1 29397 95 - 1
UGAGAACUUGUUGCCGCUGCGAAAAUGCAACUGCAGCGGCAACUGCCGCAGCAACUGCCGCAGCAACUUUUGCAGUCGGGCGCGGCACAUCAGCU
(((......((((((((((((..........))))))))))))((((((.((.(((((.............)))))...))))))))..)))... ( -40.92)
>consensus
UGAGAACUUGUUGCCGCUGCGAAAAUGCAACUGCAGCAACU_C_GCC_C_GCAACUGCGGCAGCAACUUUUGCAGACGGGCGCGGCACAUCAGCU
(((....((((..(((((((((((.(((..((((((..................))))))..)))..)))))))).)))..))))....)))... (-25.87 = -26.20 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:56 2006