Locus 5001

Sequence ID X_DroMel_CAF1
Location 13,073,983 – 13,074,078
Length 95
Max. P 0.787659
window8142

overview

Window 2

Location 13,073,983 – 13,074,078
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 96.47
Mean single sequence MFE -25.97
Consensus MFE -23.53
Energy contribution -24.53
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.91
SVM decision value 0.58
SVM RNA-class probability 0.787659
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13073983 95 + 22224390
GUCAAUUAGGAGCGGAUAAAAACCCUUUGCAGAUACACAAAAUACACAAUCUGUGUAGGAAACAACAGCAGCACCCUGGGGACGCCUGACAGCCC
((((....((.((((........))..(((............(((((.....)))))(....)....))))).))..(....)...))))..... ( -20.60)
>DroSec_CAF1 23817 93 + 1
GUCAAUUAGGAGCGGAUAAAAACCCUUUGCAGAUACACA-AAUACACAAUCUGUGUAGGAAACAACAGCAGCUCCCUGGGGACGGCUGACAGCC-
((((....(((((((........))..(((...((((((-.((.....)).))))))(....)....))))))))(((....))).))))....- ( -28.20)
>DroSim_CAF1 25483 93 + 1
GUCAAUUAGGAGCGGAUAAAAACCCUUUGCAGAUACACA-AAUACACAAUCUGUGUUGGAAACAACAGCAGCUCCCUGGGGACGGCUGACAGCC-
((((....(((((((........))..(((((((.....-........)))).(((((....)))))))))))))(((....))).))))....- ( -29.12)
>consensus
GUCAAUUAGGAGCGGAUAAAAACCCUUUGCAGAUACACA_AAUACACAAUCUGUGUAGGAAACAACAGCAGCUCCCUGGGGACGGCUGACAGCC_
((((....(((((((........))..(((............(((((.....)))))(....)....))))))))(((....))).))))..... (-23.53 = -24.53 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:49 2006