Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 226,586 – 226,685 |
Length | 99 |
Max. P | 0.594924 |
Location | 226,586 – 226,685 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -20.18 |
Energy contribution | -20.93 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.10 |
Mean z-score | -1.39 |
Structure conservation index | 0.83 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 226586 99 + 22224390 --GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUACAGAGAGAACGAGAGA---U --(((((((....((((........)))).......(((((........-..))))).......--........)))))))(((((......)))))......---. ( -23.80) >DroSec_CAF1 21504 99 + 1 --GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUUCAGAGAGAACGAGAGA---U --(((((((....((((........)))).......(((((........-..))))).......--........)))))))((((((....))))))......---. ( -24.50) >DroSim_CAF1 19371 99 + 1 --GCAGCUGAAAAUGAGCAAAAACACUCAGAAACUCUUCCCACUCGACA-ACGGGAACACUCAG--GUCACCAACAGCUGCGUUUUUCAGAGAGAACGAGAGA---U --(((((((....((((........)))).......(((((........-..))))).......--........)))))))((((((....))))))......---. ( -24.50) >DroEre_CAF1 22453 99 + 1 --GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACG-ACGGGAACACUCGG--GCCAGCAACAGCUGCGUUUUGCAGAGAGAACGAGAGA---U --(((((((....((((........)))).......(((((........-..))))).......--........)))))))(((((......)))))......---. ( -23.90) >DroYak_CAF1 23025 99 + 1 --GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACG-GCGGGAACACUCGG--GUCAGCAACAGCUGCGUUUCGCAGAGAGAACGAGAGA---U --(((((((....((((........))))...(((((((((.((....)-).))))).....))--))......))))))).(((((.........)))))..---. ( -26.60) >DroAna_CAF1 31383 100 + 1 GAGCAGCUGGAAAUC--CAAGAUCCCCAGAAAACUCUUCCCACUCGAUAGGAGGGAACACUCAAAACUCACAGGCAGCUGCAUUUUGA-----GUCUCACUCUCUGG (((...((((..(((--...)))..))))....))).............((((((...((((((((....(((....)))..))))))-----))....)))))).. ( -23.10) >consensus __GCAGCUGAAAAUGAGCAAAAACACUCAAAAACUCUUCCCACUCGACA_ACGGGAACACUCAG__GUCACCAACAGCUGCGUUUUGCAGAGAGAACGAGAGA___U ..(((((((....((((........)))).......(((((...........))))).................)))))))(((((......))))).......... (-20.18 = -20.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:21 2006