Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,759 – 21,998 |
Length | 239 |
Max. P | 0.598632 |
Location | 21,759 – 21,878 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -36.15 |
Consensus MFE | -34.44 |
Energy contribution | -33.50 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.17 |
Mean z-score | -1.35 |
Structure conservation index | 0.95 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21759 119 - 22224390 UGAUCAUAUAUGUCUCCCUUUUGGGCGAAGACGAUAGCUGCUGGCUGGGAAUGGUAGGGGGCUCAACUCGCCGAAUAUUCUUUGGCGGAGGUCUGAGAAAAGAAGAAUA-AGAGGCAUAA ........((((((((.(((((...(..((((...((((.((.(((......))).)).))))...(((((((((.....)))))).)))))))..)...)))))....-.)))))))). ( -36.40) >DroSec_CAF1 9079 119 - 1 UGAUCAAAUAUGUCUCCCUUUUUGGCGAAGACGAUAGCUGCUGGCUGGGAAUGGUAGGGGGCUCAACUCGCCGAAUGUUCUUUGGCGGAGGUCUGGGAAAAAAAGAAUA-AGAGGCAUAA ........((((((((.((((((..(..((((...((((.((.(((......))).)).))))...(((((((((.....)))))).)))))))..)..))))))....-.)))))))). ( -37.30) >DroSim_CAF1 9172 119 - 1 UGAUCAAAUAUGUCUCCCUUUUUGGCGAAGACGAUAGCUGCUGGCUGGGAAUGGUAGGGGGCUCAACUCGCCGAAUGUUCUUUGGCGGAGGUCUGGGAAAAAAAGAAUA-AGAGGCAUAA ........((((((((.((((((..(..((((...((((.((.(((......))).)).))))...(((((((((.....)))))).)))))))..)..))))))....-.)))))))). ( -37.30) >DroYak_CAF1 3858 120 - 1 UGAUCAGAUAUGUUUCCCUUUUGGGUGAAGACGACAGCUGCUGGCUGGGAAUGGUAGGGGGCUCAACUCGCCGAAUGUUCUUCGGCGGAGGUCUGGGAAAAGAAGAAGAAAGGGACAUUA ..............((((((((......((((...((((.((.(((......))).)).))))...(((((((((.....)))))).))))))).............))))))))..... ( -33.61) >consensus UGAUCAAAUAUGUCUCCCUUUUGGGCGAAGACGAUAGCUGCUGGCUGGGAAUGGUAGGGGGCUCAACUCGCCGAAUGUUCUUUGGCGGAGGUCUGGGAAAAAAAGAAUA_AGAGGCAUAA ........((((((((.(((((...(..((((...((((.((.(((......))).)).))))...(((((((((.....)))))).)))))))..)...)))))......)))))))). (-34.44 = -33.50 + -0.94)
Location | 21,878 – 21,998 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -35.08 |
Consensus MFE | -32.28 |
Energy contribution | -33.02 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.31 |
Structure conservation index | 0.92 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21878 120 + 22224390 ACACGAUGCCAAGCAGUUCAAGCGGCAGUCUCUGCAUUGACAGCCUGGGCAAUUCGCUGGAGCGGAACAUCAAGCCGUCUGAUAUACUACGUCAGAAAUCAUCUGAUAAUUUGGAUUCCA ....((..(((((.((((((..((((.((((..((.......))..))))..(((((....))))).......))))..)))...)))..((((((.....))))))..)))))..)).. ( -33.40) >DroSec_CAF1 9198 120 + 1 ACACGAUAGCGAGCAGUUCAAGCGGCAGUCUCUCCAUUGACAGUUUGGGCAAUUCGUUGGAGCGGAACAUCAAGCCGUCUGAUAUACUGCGUCAGAAAUCAUCUGAUAAUUUGGAUUCCA ...(((......((((((((..((((.(((........))).((((.(((.....))).))))..........))))..)))...)))))((((((.....))))))...)))....... ( -33.90) >DroSim_CAF1 9291 120 + 1 ACACGAUACCGAGCAGUUCAAGCGGCAGUCUCUCCAUUGACAGUUUGGGCAAUUCGCUGGAGCGGAACAUCAAGCCGUCUGAUAUACUGCGUCAGAAAUCAUCUGAUAAUUUGGAUUCCA ........((((((((((((..((((.(((........))).((((.(((.....))).))))..........))))..)))...)))))((((((.....))))))...))))...... ( -39.70) >DroYak_CAF1 3978 120 + 1 ACACGAUGCCGAGCAGUUCAAGCGGCAAUCUCGCCUUCGACAGUAUGGGCAAUUCGCUGGAGCGGAACAUUAAGCCGUCUGAUAUAUUGCGUCAAAAGUCAUCUGAUAAUUUGGAUUCCA ....(((((.((.....(((..((((......((((.(....)...))))..(((((....))))).......))))..)))....)))))))....(..(((..(....)..)))..). ( -33.30) >consensus ACACGAUACCGAGCAGUUCAAGCGGCAGUCUCUCCAUUGACAGUUUGGGCAAUUCGCUGGAGCGGAACAUCAAGCCGUCUGAUAUACUGCGUCAGAAAUCAUCUGAUAAUUUGGAUUCCA ....((..((((((((((((..((((.(((........))).((((.(((.....))).))))..........))))..)))...)))))((((((.....))))))...))))..)).. (-32.28 = -33.02 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:58 2006