Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,067,130 – 13,067,230 |
Length | 100 |
Max. P | 0.731017 |
Location | 13,067,130 – 13,067,230 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.17 |
Mean single sequence MFE | -23.85 |
Consensus MFE | -18.69 |
Energy contribution | -19.57 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.78 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.731017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13067130 100 + 22224390 UUUUUCAAGAGGCAGAAAAAGUGCAGAGCCUGCGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAUAUAUUGCUUGCCGGCUAAUGAAGCCAAUCCAAU ((((((........))))))..((((...))))((((((((.(((.....))).))))(((((((....)))))))...((((.....)))).))))... ( -25.50) >DroSec_CAF1 17387 96 + 1 UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAA----GCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(...((----(((((....))))))).).)))))))..)))).))))... ( -26.64) >DroSim_CAF1 18626 100 + 1 UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(......((((((((....))))))))).)))))))..)))).))))... ( -25.24) >DroYak_CAF1 17779 100 + 1 UUUUUCAAGAGGCAAAAAAAGUAGAGAGCUGGAGGAUGCUUGAUUAAUUUGAUAAAGCGAACGAUAAAUAUCGCUUGCCGUUUAAUGAAGGCAAUCCAAU ....((....(((..............))).))((((((((.(((((..((...((((((..........))))))..)).)))))..)))).))))... ( -18.04) >consensus UUUUCCAAGAGGCAGAAAAAGUAGAGAGCCUGAGGAUGGUUGAUUAAUUUGAUAAACCGAGCGAUAAAUAUCGCUUGCCGAUUAAUGAAGCCAAUCCAAU .........((((..............))))..((((((((.(((((((.(......((((((((....))))))))).)))))))..)))).))))... (-18.69 = -19.57 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006