Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,062,475 – 13,062,570 |
Length | 95 |
Max. P | 0.939857 |
Location | 13,062,475 – 13,062,570 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.58 |
Mean single sequence MFE | -32.70 |
Consensus MFE | -22.11 |
Energy contribution | -24.23 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.66 |
Structure conservation index | 0.68 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13062475 95 + 22224390 GCCCUAGCUUUUGGUGGUGGAUUUCUUGUUCUGGAUUUCGAUCUGGAUCUGGAUCGGGCGAGUAUAGUGCAUCAAAGG-GAUGGGGUUAGGAAUGG ((((((.(((((..(((((.(((.(((((((..((((..(((....)))..)))))))))))...))).)))))))))-).))))))......... ( -29.20) >DroSec_CAF1 12874 89 + 1 GCCCUAGCUUUUGGUGGUGGAUUUCUUGGUCUGGA------UCUGAAUCUGGAUCUGGCGAGUAUAGUGCAUCAAAGG-GGUGGGGUUAGGAAUGG ((((((.(((((..(((((.(((.((((..(..((------(((......)))))..)))))...))).)))))))))-).))))))......... ( -30.70) >DroYak_CAF1 12951 94 + 1 GCCCAAGCUUUUGGUGGUGGAU--CUGGAUCUGGAUCUGGGUCUGGAUCUGAAUCUGGCGGGUAUAGUGCACCCAAAGGGGUGGGCAUAGGAGUGG (((((..(((((...(.(((((--..(((((..(((....)))..)))))..))))).)((((.......)))))))))..))))).......... ( -38.20) >consensus GCCCUAGCUUUUGGUGGUGGAUUUCUUGAUCUGGAU_U_G_UCUGGAUCUGGAUCUGGCGAGUAUAGUGCAUCAAAGG_GGUGGGGUUAGGAAUGG .(((...(((((((((....((((((((((((((((((......)))))))))))))).))))......)))))))))....)))........... (-22.11 = -24.23 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:46 2006