Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,061,458 – 13,061,570 |
Length | 112 |
Max. P | 0.958419 |
Location | 13,061,458 – 13,061,570 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.80 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -18.81 |
Energy contribution | -19.21 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.15 |
Mean z-score | -2.11 |
Structure conservation index | 0.56 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958419 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13061458 112 - 22224390 AGGAGAGAGCAGGUCUU--------AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUGUUGCCUCAUUUGUGGCUAUGUUUUUGGAGGCGAACUUAACUGCGAAACGGGUUU .....(((.((((.(((--------((.((((((....)))))).))))).)))).)))((((..((((((((......(((...)))....))))).)))..))))............. ( -34.00) >DroSec_CAF1 11873 84 - 1 AGGAGAGAGCAGGUCUU--------AGCCCGGUUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG----------------------------AACAGGUUU ..(((((((((((((..--------.(((((((((.......)))))))))...))))).))))))))(((.(....).))).----------------------------......... ( -33.20) >DroSim_CAF1 12886 84 - 1 AGGAGAGAGCAGGUCUU--------AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG----------------------------AACAGGUUU ..(((((((((((((..--------.((((((..(.......)..))))))...))))).))))))))(((.(....).))).----------------------------......... ( -29.70) >DroEre_CAF1 11255 111 - 1 AGGAGAGAGCCGGUCUG--------AGCCCGGCUUUAAACUCGGACUGGGUCUUGAUCUAGUUUUCUUACCUCAUUUGUGACUAUGUCUUUGGAGGCAAAGUUGACUGGG-AACAGGUUU ....((((.((((((((--------((............)))))))))).))))..(((((((..(((.((((......(((...)))....))))..)))..)))))))-......... ( -36.70) >DroYak_CAF1 11903 106 - 1 AGGAGAGAGCAGGUCUUGGUCUUAUAACCUGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCCUACCUCAUUUGUG-------------AGGCCAAGUUGACUGCG-AACAGGUUU ........((((..(((((((((((((.((((((....))))))(((((((....))))))).............)))))-------------))))))))....)))).-......... ( -35.50) >consensus AGGAGAGAGCAGGUCUU________AGCCCGGCUCAAAAGUCGGACUGGGUCUUGAUCUAGUUUUCUUGCCUCAUUUGUGGCG__________AGGC_AA_UU_ACUG_G_AACAGGUUU ....(((.(((((...............((((((....))))))(((((((....)))))))...))))))))((((((.................................)))))).. (-18.81 = -19.21 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:45 2006