Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,044,665 – 13,044,772 |
Length | 107 |
Max. P | 0.618667 |
Location | 13,044,665 – 13,044,772 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 94.39 |
Mean single sequence MFE | -20.33 |
Consensus MFE | -17.89 |
Energy contribution | -19.33 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.91 |
Structure conservation index | 0.88 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13044665 107 - 22224390 UUUUAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAAGGAUGCAUUUUAUAUCGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACUCCCUCUU ....((((((((.(((.(((((..(......).))))).))).))......)))))).(((((((.......)))))))............................ ( -16.40) >DroSec_CAF1 14106 106 - 1 UUUAAU-UGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU ......-(((((.((....((((((((.....)))))))).....))..)))))((..(((((((.......)))))))....))...................... ( -19.80) >DroSim_CAF1 13641 107 - 1 CUUAAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU ...(((((((((.((....((((((((.....)))))))).....))..)))))))))(((((((.......)))))))............................ ( -24.80) >consensus UUUAAUCUGCAAUUGUUUUCUUCUGUAAUUUCUAUGGAAGCAUUUCAUUUUGCAGAUUCGCGUGGCCUGGAACCAUGUGUUUUUCUCUCCCUCUCAUACGCCCUCUU ...((((((((..((....((((((((.....)))))))).....))...))))))))(((((((.......)))))))............................ (-17.89 = -19.33 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:39 2006