Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,042,544 – 13,042,638 |
Length | 94 |
Max. P | 0.940143 |
Location | 13,042,544 – 13,042,638 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 72.64 |
Mean single sequence MFE | -35.67 |
Consensus MFE | -16.57 |
Energy contribution | -16.80 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.11 |
Mean z-score | -2.89 |
Structure conservation index | 0.46 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13042544 94 - 22224390 CCUUUGGCCGCAUUCAGCU--GCCAACUGAGCCAAAACCCUUUGGUUUAAAGGGGUUGGGGUUGAGAGGGUGGCUAGAAGGGUUGAGG--------GGGUGGUG ((((..(((.(.((((((.--.((..((.((((..((((((((......))))))))..)))).))..))..))).)))))))..)))--------)....... ( -46.80) >DroEre_CAF1 12495 96 - 1 CCU-CGUCCGCUUUCGUCU--GCCAACUGAGCCAAAACCCUGUUGUUUAAAAG-----GGGUUGAGGGGGUGGCUAGAAGAGUUGUGGGUGAUGAGGGCUGGUG (((-(((((((.(((.(((--((((.((...((..((((((.((.....)).)-----)))))..)))).)))).))).)))..))))...))))))....... ( -33.30) >DroYak_CAF1 12939 81 - 1 CCU-CGUCCGCUUUCAUCUGAGCCAACUGAGCCAAAACCCUUUUGUUCC-AAG-----GGGUUGAGGGGGUGGCUACAAGAGUUGUGU---------------- .((-(((..((((......))))..))(((((((...((((((.(..(.-...-----)..).)))))).))))).)).)))......---------------- ( -26.90) >consensus CCU_CGUCCGCUUUCAUCU__GCCAACUGAGCCAAAACCCUUUUGUUUAAAAG_____GGGUUGAGGGGGUGGCUAGAAGAGUUGUGG________GG_UGGUG .......................(((((.(((((...((((((..(((..........)))..)))))).))))).....)))))................... (-16.57 = -16.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:38 2006