Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,430,195 – 1,430,296 |
Length | 101 |
Max. P | 0.521259 |
Location | 1,430,195 – 1,430,296 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 82.92 |
Mean single sequence MFE | -35.66 |
Consensus MFE | -22.02 |
Energy contribution | -22.42 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.18 |
Mean z-score | -1.78 |
Structure conservation index | 0.62 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1430195 101 - 22224390 AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAAAAGUG---GA--AAAAAGC-----GAAAA .....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..)))))...)---))--..)))))-----).... ( -34.40) >DroSec_CAF1 34922 98 - 1 AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA--GGG---AA--A-AAAGC-----GAAAA .....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..))))--)))---).--.-)))))-----).... ( -39.90) >DroSim_CAF1 26485 99 - 1 AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA--GGG---AA--AAAAAGC-----GAAAA .....((((((..((((((((..(((((((-.(((..((.((((((....).))))).))..))).))))....)))..))))--)))---).--..)))))-----).... ( -38.40) >DroEre_CAF1 31715 99 - 1 AGCGACGCUUUCGUCCUUUUUCGGCCUAUG-AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCGAAAAA--GAG---GA--AAAAUGC-----GAAAA .....(((.((..((((((((.((((....-.))))...((((((...((((.((((....))))))))....)))))).)))--)))---))--..)).))-----).... ( -37.00) >DroWil_CAF1 108931 109 - 1 AGCGACGAUUUCGUCCUUUUUCGGCCUAUGCAGGGAUUGGCAUCGCUGCC---AACUUCGUCGCUGACCAACGCUGCAACAAAAUGUGCACGAUGAAACAGCAGAACAAAAA ((((((((....((((((.....((....))))))))(((((....))))---)...))))))))...((.((.((((........)))))).))................. ( -28.60) >consensus AGCGACGCUUUCGUCCUUUUUCGGCCUAUG_AGGCUCUGUCGCCGCUGACGCCGGCGUCGCUGCUGCGUAACUCGGCAAAAAA__GGG___GA__AAAAAGC_____GAAAA (((((((((.............(((((....)))))..((((....))))...)))))))))((((.......))))................................... (-22.02 = -22.42 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:07 2006