Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,040,523 – 13,040,629 |
Length | 106 |
Max. P | 0.609101 |
Location | 13,040,523 – 13,040,629 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -14.47 |
Consensus MFE | -13.95 |
Energy contribution | -13.40 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.14 |
Mean z-score | -0.58 |
Structure conservation index | 0.96 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609101 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13040523 106 + 22224390 GCCACAUUCAAAUCCCUUUCAAAAUGAACCUAAUUUUCACUAUUUUUUGCUGGUGAAUUCUUCAAGCCCAGAAGCGCAAGCAUUGAUUUUAAAGUUUCUCAAAAAG ...............((((.(((((.((.......(((((((........)))))))((((........))))((....)).)).)))))))))............ ( -13.80) >DroSec_CAF1 10145 95 + 1 GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU----------- .........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))......----------- ( -14.80) >DroSim_CAF1 10052 95 + 1 GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU----------- .........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))......----------- ( -14.80) >consensus GCCGCAUUCAAAUCCCAUUCAAAAUGAACCCAAUUUUCACUAUUUAUUGCUGGUGAAUUUUCCAAGCCCAGGAGCACUAGCAUCGAUUUUAAAUU___________ .........(((((..........((((.......))))........((((((((....((((.......))))))))))))..)))))................. (-13.95 = -13.40 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:36 2006