Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 13,040,083 – 13,040,179 |
Length | 96 |
Max. P | 0.556562 |
Location | 13,040,083 – 13,040,179 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 87.80 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -13.80 |
Energy contribution | -14.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.04 |
Mean z-score | -1.47 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 13040083 96 + 22224390 UCAACAUUUCUGCAGCAUU--UCAGUAAGAUUGGUAGGAAUGUCAUAAUAAUUUCAUAAACUAAAAGGAUUAAAUUCUCGCACAGUUGAUUGAAAUGC ..............(((((--(((((..((((((..(((((....((((..(((.........)))..)))).)))))..).))))).)))))))))) ( -19.60) >DroSec_CAF1 9717 96 + 1 CCAACAUUUCUGCAGCUCU--UCAGUAAGAUUAGUAGGAAUGUCAUAACAAUUUCAUAAACUAAAAGGAUUAAAUUCUCGCACAGUUGAUUGAAAUGC ...((((((((((...(((--(....))))...)))))))))).......((((((..((((....(((......))).....))))...)))))).. ( -18.80) >DroEre_CAF1 10010 96 + 1 CCAACAUUUCUGCUGCAAA--UCAGCAAGAUUAGCAAGAAUGUCAUAGCAAUUUCAUAAACUAAAAGGAUUAAAUUCUCGCACAGUUGAUUGAAAUGC ...(((((..(((((...(--((.....))))))))..)))))....(((.(((((..((((....(((......))).....))))...)))))))) ( -18.70) >DroYak_CAF1 10390 98 + 1 CGCACAUUUCUGCAGCAUUUUUUAGCAAGAUUAGCAAGAAUGUCAUAGGAAUUUCAUAAACUAAACGGAUAAAAUACUGGCACAGUUGAUUGAAAUAC .......(((((..((((((((..((.......))))))))))..)))))((((((..((((...(((........)))....))))...)))))).. ( -17.30) >consensus CCAACAUUUCUGCAGCAUU__UCAGCAAGAUUAGCAAGAAUGUCAUAACAAUUUCAUAAACUAAAAGGAUUAAAUUCUCGCACAGUUGAUUGAAAUGC ...((((((((((....................)))))))))).......((((((..((((....(((......))).....))))...)))))).. (-13.80 = -14.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:35 2006