Locus 4986

Sequence ID X_DroMel_CAF1
Location 13,009,524 – 13,009,631
Length 107
Max. P 0.668772
window8125

overview

Window 5

Location 13,009,524 – 13,009,631
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 77.32
Mean single sequence MFE -22.75
Consensus MFE -10.38
Energy contribution -11.18
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.46
SVM decision value 0.29
SVM RNA-class probability 0.668772
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 13009524 107 + 22224390
CUUUUACAACUUUGUAGCUCAUAAAUUCUCAUUGAGCCACUCAAAGAGAUGGUGUUGCACCUUCGUUGUCAGUGGCCCUAUUUCAUAGUCAUCAUCUGGCGAACCUU
.........(((((..(((((...........)))))....))))).((.((((...)))).)).((((((((((..((((...))))...))).)))))))..... ( -23.60)
>DroSec_CAF1 14749 107 + 1
CUUGUACAACUUUGUAGCUCAUAAGUUCUCAUUGAGCCAGUCAAUGAGGUGGAGUUGCACCUUCGCUGUCAGUGCCCUUAUUUCACAGUCAUCAUCUGGGGAACCUU
............((((((((......(((((((((.....)))))))))..)))))))).....(((((.((((....))))..)))))........((....)).. ( -25.20)
>DroSim_CAF1 13645 107 + 1
CUUUUACAACUUUGUAGCUCAUAAAUUCUCAUUGAGCCACUCAAUGAGUUGGUGUUGCACCUUCGCUGUCAGUGUCCUUAUUUCACAGUCAUCAUCUGAGGAACCUU
........((.(((((((.........(((((((((...)))))))))..((((...))))...)))).))).)).....((((.(((.......))).)))).... ( -22.50)
>DroEre_CAF1 20166 83 + 1
CUUUUACAACUUUGUGGCUCAUAAAUUCUCAUUGAGCCACUCAAAGAGGUG------CACCACUGCUGCC--------------A----CUGCAUCUUGGGAACCUU
.............((((((((...........)))))))).....(((((.------..(((.(((....--------------.----..)))...)))..))))) ( -24.10)
>DroYak_CAF1 17427 95 + 1
CUUUUACAACUUUGUAGCUCAUAAAUUCUCAUUGAGCCACUCAAAGAGGUGG-----CACCACUGCCCCC-------CAUUUCCACACCCAUCAUCCUAGGAACCUU
.........(((((..(((((...........)))))....))))).((.((-----((....)))))).-------...((((...............)))).... ( -18.36)
>consensus
CUUUUACAACUUUGUAGCUCAUAAAUUCUCAUUGAGCCACUCAAAGAGGUGG_GUUGCACCUUCGCUGUCAGUG_CCCUAUUUCACAGUCAUCAUCUGGGGAACCUU
.........(((((..(((((...........)))))....))))).((((......)))).............................................. (-10.38 = -11.18 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:34 2006