Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,996,224 – 12,996,316 |
Length | 92 |
Max. P | 0.531557 |
Location | 12,996,224 – 12,996,316 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 87.19 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -20.98 |
Energy contribution | -21.50 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.05 |
Mean z-score | -1.62 |
Structure conservation index | 0.83 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12996224 92 - 22224390 AUUGAAAUAUCAUGUUUUUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUUGUGGUCAAAUUGGCUGCUCU ....................--.(((...((((......(((((((.(((((((((....))).))....)))))))))))...)))).))).. ( -25.60) >DroSec_CAF1 2387 92 - 1 AUUGAAAUAUUAUCUUUGUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUCAUCGUGGUCAAAGUGGCUGCUCU ....................--.(((...(((((.....(((((((.(((.(((((....))).))..)))...)))))))..))))).))).. ( -27.50) >DroSim_CAF1 2386 92 - 1 AUUGAAAUAUUAUCUUUGUA--CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUCAUAGUGGUCAAAGUGGCUGCUCU ....................--.(((...(((((.....(((((((.(((.(((((....))).))..)))...)))))))..))))).))).. ( -27.50) >DroEre_CAF1 2497 92 - 1 AAAGGAAUAUCAUAUUUGUA--UAGCUUUGCCAUCAUUGUGACCACCGACUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCCCU ..(((..(((((....)).)--))((...(((((.....(((((((.((..(((((....))).))......)))))))))..))))).))))) ( -25.90) >DroYak_CAF1 2457 92 - 1 AAAGAAAUAUCUUGUUUGUA--UAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCCCU .((((....)))).......--..((...(((((.....(((((((.(((((((((....))).))....)))))))))))..))))).))... ( -28.20) >DroAna_CAF1 2285 90 - 1 A----UAUAUCCUUUUUUAAACCAGAUUCGCCAUAAUUGUGACCACCGACUGCGCCUGCUGGUUGCCCAUUAUCGUAGUGAAAGUGGCAGCUCU .----........................(((((....(..((((.((........)).))))..).(((((...)))))...)))))...... ( -16.20) >consensus AUUGAAAUAUCAUCUUUGUA__CAGCUUUGCCAUCAUUGUGACCACCGAUUGCGCCUGCUGGCUGCCCAUAAUCGUGGUCAAAGUGGCUGCUCU ........................((...(((((.....(((((((.....(((((....))).))........)))))))..))))).))... (-20.98 = -21.50 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:30 2006