Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,983,055 – 12,983,151 |
Length | 96 |
Max. P | 0.757518 |
Location | 12,983,055 – 12,983,151 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -18.13 |
Energy contribution | -19.29 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.61 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12983055 96 - 22224390 UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC ..........((((((((((....)))).(((.(((((...(((......))).--------..))))).))).))))))((.(..(((......)))..).)) ( -30.90) >DroSec_CAF1 13736 96 - 1 UCUUUUGUUCGGCUGCCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC ..........((((((((((....)))))(((.(((((...(((......))).--------..))))).)))..)))))((.(..(((......)))..).)) ( -33.60) >DroSim_CAF1 4824 96 - 1 UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC ..........((((((((((....)))).(((.(((((...(((......))).--------..))))).))).))))))((.(..(((......)))..).)) ( -30.90) >DroEre_CAF1 9714 89 - 1 UCUUUUGUUCGGUUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGCCAACUACGAGCAAUUAUCCACUGUCCAGUGCUUGG--------------- ....((((((((((((((((....)))(((...........)))........))))))..))))))).....((((....)))).....--------------- ( -27.30) >DroYak_CAF1 9904 96 - 1 UCUUUUGUUCGCUUGCCAUGGUGACACGAGGAAAAUGGCAACUCUUACGUGAGC--------AUCCAUUAUCCACUAUCCAGUGUUUAGUGUUAAGUGUACAGC ....((((.((((((.(((...(((((..(((.(((((...(((......))).--------..))))).)))........)))))..))).)))))).)))). ( -26.30) >consensus UCUUUUGUUCGGCUGGCGUGGUGACACGGGGAAAAUGGCAACUCUUACGUGAGC________AUCCAUUAUCCAUUAGCCGCCAUCCACCAUCCAGUGUUUAGC ..........((((((((((....)))).(((.(((((.........(....)...........))))).))).))))))........................ (-18.13 = -19.29 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:25 2006