Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,981,662 – 12,981,752 |
Length | 90 |
Max. P | 0.995817 |
Location | 12,981,662 – 12,981,752 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -15.50 |
Consensus MFE | -15.50 |
Energy contribution | -15.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 1.00 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867838 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12981662 90 + 22224390 UUUUUUUUUUUUUUUGUAUUAUUUUUCGCCACUCAUUAUGGUCGACUGCAAUCGGCGAUUUGGUGUGUUAACACAUUUGCCUACCCCACC .........................((((((.......))).)))........(((((....((((....))))..)))))......... ( -15.50) >DroSec_CAF1 12406 80 + 1 UUUUUUUUUUUUU----------UUUCGCCACUCAUUAUGGUCGACUGCAAUCGGCGAUUUGGUGUGUUAACACAUUUGCCUACCCCGCC .............----------..((((((.......))).)))........(((((....((((....))))..)))))......... ( -15.50) >DroSim_CAF1 3500 80 + 1 UUUUUUUUUUUUU----------UUUCGCCACUCAUUAUGGUCGACUGCAAUCGGCGAUUUGGUGUGUUAACACAUUUGCCUACCCCGCC .............----------..((((((.......))).)))........(((((....((((....))))..)))))......... ( -15.50) >DroYak_CAF1 8344 84 + 1 CUUUUCUGUUUUU------UAUUUUUCGCCACUCAUUAUGGUCGACUGCAAUCGGCGAUUUGGUGUGUUAACACAUUUGCCUACCCCGCC .............------......((((((.......))).)))........(((((....((((....))))..)))))......... ( -15.50) >consensus UUUUUUUUUUUUU__________UUUCGCCACUCAUUAUGGUCGACUGCAAUCGGCGAUUUGGUGUGUUAACACAUUUGCCUACCCCGCC .........................((((((.......))).)))........(((((....((((....))))..)))))......... (-15.50 = -15.50 + 0.00)
Location | 12,981,662 – 12,981,752 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -18.51 |
Energy contribution | -18.32 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -2.38 |
Structure conservation index | 1.00 |
SVM decision value | 2.62 |
SVM RNA-class probability | 0.995817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12981662 90 - 22224390 GGUGGGGUAGGCAAAUGUGUUAACACACCAAAUCGCCGAUUGCAGUCGACCAUAAUGAGUGGCGAAAAAUAAUACAAAAAAAAAAAAAAA ((((..((..(((....)))..)).))))...((((((....((...........))..))))))......................... ( -18.00) >DroSec_CAF1 12406 80 - 1 GGCGGGGUAGGCAAAUGUGUUAACACACCAAAUCGCCGAUUGCAGUCGACCAUAAUGAGUGGCGAAA----------AAAAAAAAAAAAA (((((..(.((....((((....)))))))..)))))........(((.((((.....)))))))..----------............. ( -18.80) >DroSim_CAF1 3500 80 - 1 GGCGGGGUAGGCAAAUGUGUUAACACACCAAAUCGCCGAUUGCAGUCGACCAUAAUGAGUGGCGAAA----------AAAAAAAAAAAAA (((((..(.((....((((....)))))))..)))))........(((.((((.....)))))))..----------............. ( -18.80) >DroYak_CAF1 8344 84 - 1 GGCGGGGUAGGCAAAUGUGUUAACACACCAAAUCGCCGAUUGCAGUCGACCAUAAUGAGUGGCGAAAAAUA------AAAAACAGAAAAG (((((..(.((....((((....)))))))..)))))........(((.((((.....)))))))......------............. ( -18.80) >consensus GGCGGGGUAGGCAAAUGUGUUAACACACCAAAUCGCCGAUUGCAGUCGACCAUAAUGAGUGGCGAAA__________AAAAAAAAAAAAA (((((..(.((....((((....)))))))..)))))........(((.((((.....)))))))......................... (-18.51 = -18.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:24 2006