Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,975,449 – 12,975,546 |
Length | 97 |
Max. P | 0.748724 |
Location | 12,975,449 – 12,975,546 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 82.13 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -20.42 |
Energy contribution | -20.87 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.69 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12975449 97 + 22224390 AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGCUUGGGCUUUUUACUCUUUCGGGGAGAAAGGCCAAAGC ......(((((.....((((..((((((..((((...)))))))))))))).....)))))..((((((((.(((.....))).))))))))..... ( -30.10) >DroSec_CAF1 6398 97 + 1 AUGAAUGGCCGUUAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGGUCUGGGCUUUUUAGUCAUUCGGGGAGAAAGGCCAAAGC .....(((((......((((..((((((..((((...)))))))))))))).(((((.(....((((....))))...).)))))...))))).... ( -30.30) >DroYak_CAF1 2008 80 + 1 AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCGGCCAUGCGGAAGUGUUUUCACUU-----------------CUCUUACGGGGAGAAAGGCCAAGGC .....(((((......((((((((...(((((......))))))))))))).(((-----------------(((....))))))...))))).... ( -27.80) >consensus AUGAAUGGCCGUAAAAGAAAAUGCAUUUUCCCGCCAUGCGGAAGUGUUUUCCCUCUCGG__UGGGCUUUUUACUCUUUCGGGGAGAAAGGCCAAAGC .....(((((......((((((((...((((.((...)))))))))))))).(((((.......................)))))...))))).... (-20.42 = -20.87 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006