Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,971,952 – 12,972,062 |
Length | 110 |
Max. P | 0.999933 |
Location | 12,971,952 – 12,972,062 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -31.09 |
Consensus MFE | -11.12 |
Energy contribution | -13.80 |
Covariance contribution | 2.68 |
Combinations/Pair | 1.30 |
Mean z-score | -3.78 |
Structure conservation index | 0.36 |
SVM decision value | 4.65 |
SVM RNA-class probability | 0.999933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12971952 110 + 22224390 UGAA---ACAACAACAAUUAUCCCAACGCUUGCAACAUU--UUCGUUCGAAUUCCUCCAUUCCCAUUCCUGCUAUUUCAACUGGAAAGCUGG--AAUUGGAAUGGGAC---UGGAAGCAA ....---.......................(((......--(((....)))....((((.(((((((((....((((((.((....)).)))--))).))))))))).---)))).))). ( -31.20) >DroSim_CAF1 6958 86 + 1 UGAA---ACAACAACAAUUAUCCCAAUGCUUGCAACAUU--UUCGUUCGAAU------------------------UCAACUGGAAAGCAGG--AAUUGGAAUGGGAC---UGGAAGCAA ....---...................(((((.((....(--..(((((.(((------------------------((..((....))...)--)))).)))))..).---)).))))). ( -21.60) >DroEre_CAF1 6186 110 + 1 CGAA---ACAACAACAAUUAUUCCAACGAUUGCAACAUU--UUCGUUCGAAUUCCUCCAUUCCCAUUCCUGCUCUUUCAGCUGGAAGCCUGG--AAUUCGAAUGGGAU---UGGAAGCAA ....---......................((((..((.(--..((((((((((((..........((((.(((.....))).))))....))--))))))))))..).---))...)))) ( -30.34) >DroYak_CAF1 6548 108 + 1 CGAAAAAACAACAACAAUUAUUCCAACGCUUGCAACAUU--UUCAUUCGAAUUCCUCCAU------UCCUGCUACUUCAGCUGGAAACCUGG--AAUUCGAAUGGGAUU--UGGAAGCAA ...........................((((.(((...(--..((((((((((((....(------(((.(((.....))).))))....))--))))))))))..).)--)).)))).. ( -36.50) >DroAna_CAF1 9252 111 + 1 AACA---ACAACAACAAUUGUUCCAUCUCUUGCAACAUAUCUCGGUUCGCAUUCCUCCAAUCCC------GUUGUUUCGACUGGAUUUUUGGGGAGAGUGAAUGGGAAUAUUGCAGGUGA ...(---((((......)))))...((.((((((..((((..(.((((((.((((((.(((((.------((((...)))).)))))...)))))).)))))).)..)))))))))).)) ( -35.80) >consensus CGAA___ACAACAACAAUUAUUCCAACGCUUGCAACAUU__UUCGUUCGAAUUCCUCCAUUCCC__UCCUGCUAUUUCAACUGGAAACCUGG__AAUUCGAAUGGGAC___UGGAAGCAA ...........................((((.((.......((((((((((((...(((.......(((.(((.....))).)))....)))..)))))))))))).....)).)))).. (-11.12 = -13.80 + 2.68)
Location | 12,971,952 – 12,972,062 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -5.09 |
Energy contribution | -7.45 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.29 |
Mean z-score | -1.61 |
Structure conservation index | 0.18 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12971952 110 - 22224390 UUGCUUCCA---GUCCCAUUCCAAUU--CCAGCUUUCCAGUUGAAAUAGCAGGAAUGGGAAUGGAGGAAUUCGAACGAA--AAUGUUGCAAGCGUUGGGAUAAUUGUUGUUGU---UUCA ...((((((---.(((((((((.(((--.(((((....))))).)))....))))))))).))))))..(((....)))--(((((.....)))))(..(((((....)))))---..). ( -34.70) >DroSim_CAF1 6958 86 - 1 UUGCUUCCA---GUCCCAUUCCAAUU--CCUGCUUUCCAGUUGA------------------------AUUCGAACGAA--AAUGUUGCAAGCAUUGGGAUAAUUGUUGUUGU---UUCA .........---(((((.(((.((((--(..(((....))).))------------------------))).)))....--(((((.....))))))))))............---.... ( -14.90) >DroEre_CAF1 6186 110 - 1 UUGCUUCCA---AUCCCAUUCGAAUU--CCAGGCUUCCAGCUGAAAGAGCAGGAAUGGGAAUGGAGGAAUUCGAACGAA--AAUGUUGCAAUCGUUGGAAUAAUUGUUGUUGU---UUCG ...((((((---.((((((((...((--(..(((.....)))....)))...)))))))).)))))).((((.(((((.--..........))))).))))............---.... ( -32.40) >DroYak_CAF1 6548 108 - 1 UUGCUUCCA--AAUCCCAUUCGAAUU--CCAGGUUUCCAGCUGAAGUAGCAGGA------AUGGAGGAAUUCGAAUGAA--AAUGUUGCAAGCGUUGGAAUAAUUGUUGUUGUUUUUUCG ..((((.((--(....((((((((((--((....((((.((((...)))).)))------)....))))))))))))..--....))).))))(..((((((((....))))))))..). ( -34.60) >DroAna_CAF1 9252 111 - 1 UCACCUGCAAUAUUCCCAUUCACUCUCCCCAAAAAUCCAGUCGAAACAAC------GGGAUUGGAGGAAUGCGAACCGAGAUAUGUUGCAAGAGAUGGAACAAUUGUUGUUGU---UGUU ((.(.(((((((((((..(((.(..((((((...((((.((.......))------.))))))).)))..).)))..).)).)))))))).).))...((((((....)))))---)... ( -25.30) >consensus UUGCUUCCA___AUCCCAUUCCAAUU__CCAGCUUUCCAGUUGAAAUAGCAGGA__GGGAAUGGAGGAAUUCGAACGAA__AAUGUUGCAAGCGUUGGAAUAAUUGUUGUUGU___UUCA ...((((((....((((............(((........))).............)))).))))))......(((((.....((((.((.....)).))))....)))))......... ( -5.09 = -7.45 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:19 2006