Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,971,710 – 12,971,844 |
Length | 134 |
Max. P | 0.848604 |
Location | 12,971,710 – 12,971,808 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -14.64 |
Energy contribution | -15.45 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -2.00 |
Structure conservation index | 0.61 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12971710 98 + 22224390 AAUUGAAAAGCAUUGCACGAG-----CGUCGUCGACGCUUGGGAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGAUGUGGAACCAAA---CAGACGUACGUAAUUUACA ...........(((((.((((-----((((...))))))))((...((.((((.((((((....)))))--------------)..)))).))))...---.........)))))..... ( -22.30) >DroSim_CAF1 6713 101 + 1 AAUUGAAAAGCAUUGCACGAG-----CGACGUCGACGUUUGGGAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGAUGGGGAACCAAACAACAGACGUACGUAAUUUACA .........((.((((....)-----))).))(((((((((..(((((((.((.....)))))))))..--------------...(((....))).....))))))).))......... ( -24.10) >DroEre_CAF1 5949 94 + 1 AAUUGAAAAGCAUUGCACGAG-----CGACGUCAACGUUUGGUAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGUUGGGGAACCAA-------ACAAACGUAAUUUACA .........((.((((....)-----))).))..((((((((((((((((.((.....)))))))))))--------------..((((....))))-------.)))))))........ ( -26.30) >DroYak_CAF1 6289 114 + 1 AAUUGAAAAGCAUUGCACGAACGGAACGACGUCAACGUUUGAGAUAUUGCACAAUAUAUGGCAAUAUAUCUAUGUAUAUGUACAGUUGGGGAACCAAA------ACCGACGUAAUUUACA .......................(((..(((((.((((..((.(((((((.((.....))))))))).)).))))..........((((....)))).------...)))))..)))... ( -23.40) >consensus AAUUGAAAAGCAUUGCACGAG_____CGACGUCAACGUUUGGGAUAUUGCACAAUAUAUGGCAAUAUAU______________AGAUGGGGAACCAAA______ACGUACGUAAUUUACA .............((.(((..........)))))(((((((..(((((((.((.....)))))))))...................(((....))).........)))))))........ (-14.64 = -15.45 + 0.81)
Location | 12,971,745 – 12,971,844 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -14.88 |
Energy contribution | -15.50 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.12 |
Mean z-score | -2.15 |
Structure conservation index | 0.61 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848604 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12971745 99 + 22224390 GGGAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGAUGUGGAACCAAA---CAGACGUACGUAAUUUACAACUUCUUU-UUUCGAGAAAUGCUUGAGAAAGGAGUGA .((...((.((((.((((((....)))))--------------)..)))).))))...---...................(((.((((-(((((((.....)))))))))))))).. ( -20.90) >DroSim_CAF1 6748 102 + 1 GGGAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGAUGGGGAACCAAACAACAGACGUACGUAAUUUACAACUUCUUU-UUUCGAGAAAUGCUUGAGAAAGGAGCGA ...(((((((.((.....)))))))))..--------------...(((....))).........(((..(((...)))....(((((-(((((((.....))))))))))))))). ( -25.00) >DroEre_CAF1 5984 95 + 1 GGUAUAUUGCACAAUAUAUGGCAAUAUAU--------------AGUUGGGGAACCAA-------ACAAACGUAAUUUACAACUUCUUU-UUUCGAGAAAUGCUUGAGUUAAGUAGGU .(((((((((.((.....)))))))))))--------------..((((....))))-------................(((((((.-.((((((.....))))))..))).)))) ( -23.60) >DroYak_CAF1 6329 111 + 1 GAGAUAUUGCACAAUAUAUGGCAAUAUAUCUAUGUAUAUGUACAGUUGGGGAACCAAA------ACCGACGUAAUUUACAACUUCUUUUUUUCGAGAAAUGCUUAAGUUAAGGAGGU ((.(((((((.((.....))))))))).))..(((((((((....((((....)))).------....)))))...))))((((((((..((..((.....))..))..)))))))) ( -27.70) >consensus GGGAUAUUGCACAAUAUAUGGCAAUAUAU______________AGAUGGGGAACCAAA______ACGUACGUAAUUUACAACUUCUUU_UUUCGAGAAAUGCUUGAGAAAAGAAGGA ...(((((((.((.....)))))))))...................(((....))).........................((((((...((((((.....))))))..)))))).. (-14.88 = -15.50 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:17 2006