Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,426,024 – 1,426,114 |
Length | 90 |
Max. P | 0.763857 |
Location | 1,426,024 – 1,426,114 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -26.55 |
Energy contribution | -28.17 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.04 |
Mean z-score | -2.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1426024 90 + 22224390 GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCACUUGUGCUGUGCUGUCGGCCAGUCGCGUUUACGU (((((((......))).....(((((((.((((((((.((.(((......))))).))).))))))))))))......))))........ ( -37.30) >DroSec_CAF1 30746 90 + 1 GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCAUUUGUGCUGUGCUGUCGGCCAGUCGCGUUAACGU (((((((......))).....(((((((.(((((.((...((((......))))...)).))))))))))))......))))........ ( -35.40) >DroEre_CAF1 25964 82 + 1 GCGAACCAAAUAAGCCAAAUAGACAGC---AGCAGAGCGCCGGCCAAAUUGCUGCACUUCUG-----CUGUCGGCCAGUCGCGUUAACGU ((((.........(((.....((((((---((..(((.((.(((......))))).))))))-----))))))))...))))........ ( -26.10) >consensus GCGAGCCAAAUAAGGCAAAUAGACAGCAGCAGCAGAGCGCCGGCCAAAUUGCUGCACUUGUGCUGUGCUGUCGGCCAGUCGCGUUAACGU (((((((......))).....(((((((.((((((((.((.(((......))))).))).))))))))))))......))))........ (-26.55 = -28.17 + 1.61)
Location | 1,426,024 – 1,426,114 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.37 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -24.39 |
Energy contribution | -26.00 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.04 |
Mean z-score | -2.12 |
Structure conservation index | 0.76 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1426024 90 - 22224390 ACGUAAACGCGACUGGCCGACAGCACAGCACAAGUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC ........((((......((((((((((((..(((((.((......))..))))).))))).))))))).....(((......))))))) ( -35.90) >DroSec_CAF1 30746 90 - 1 ACGUUAACGCGACUGGCCGACAGCACAGCACAAAUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC ........((((......((((((((((((....(((.((......))..)))...))))).))))))).....(((......))))))) ( -30.90) >DroEre_CAF1 25964 82 - 1 ACGUUAACGCGACUGGCCGACAG-----CAGAAGUGCAGCAAUUUGGCCGGCGCUCUGCU---GCUGUCUAUUUGGCUUAUUUGGUUCGC ........(((((((((((((((-----(((.(((((.((......))..)))))...))---)))))).....)))).....)).)))) ( -30.10) >consensus ACGUUAACGCGACUGGCCGACAGCACAGCACAAGUGCAGCAAUUUGGCCGGCGCUCUGCUGCUGCUGUCUAUUUGCCUUAUUUGGCUCGC ........((((......((((((((((((..(((((.((......))..))))).))))).))))))).....(((......))))))) (-24.39 = -26.00 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:02 2006