Locus 4965

Sequence ID X_DroMel_CAF1
Location 12,958,972 – 12,959,069
Length 97
Max. P 0.516519
window8097

overview

Window 7

Location 12,958,972 – 12,959,069
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 82.18
Mean single sequence MFE -28.18
Consensus MFE -18.47
Energy contribution -19.44
Covariance contribution 0.97
Combinations/Pair 1.17
Mean z-score -1.56
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.516519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12958972 97 + 22224390
AGAGAUUAAAGAUCGGGGCCGCGGGGAACCAGUUAUGGCUCAGUUAGUCCCAUAAGCGAGCAAAUUGAUUGGCCAUAAUAGCGCCACAACUUUUGGC
...((((...))))..(((.((((....)).((((((((.((((((((...............)))))))))))))))).)))))............ ( -26.96)
>DroSec_CAF1 4390 96 + 1
AGAGAUUAAAGAUCGGGGCCGCGGGGAACCAGUUAUGGCUCAGUUAGUC-CAUAAGCGAGCAAAUUGAUUGGCCAUAAUAGCGCCACAACUUUUGGC
...((((...))))..(((.((((....)).((((((((.((((((((.-.............)))))))))))))))).)))))............ ( -27.04)
>DroSim_CAF1 3408 96 + 1
AGAGAUUAAAGAUCGGGGCCGCGGGGAACCAGUUAUGGCUCAGUUAGUC-CAUAAGCGAGCAAAUUGAUUGGCCAUAAUAGCGCCACAACUUUUGGC
...((((...))))..(((.((((....)).((((((((.((((((((.-.............)))))))))))))))).)))))............ ( -27.04)
>DroEre_CAF1 4569 95 + 1
AGAGAUUAAAGAUCGG-GCCGCGGGGAACCAGUUAUGGCUCAGUUAGUC-CAUAAGCAAGCAAAUUGAUUGGCCAUAACACCGCCGCAAUUUUUGGC
.....((((((((...-((.(((((....).((((((((.((((((((.-.............)))))))))))))))).)))).)).)))))))). ( -30.04)
>DroYak_CAF1 4434 88 + 1
AGAGAUUAAAGAUCGGGGCCGCGGGGAACCAGUUAUGGCUCAGUUAGUC-CAUA--------AAUUGAUUGGCCAUAACGCCGCCGCAACUUUUGGC
...((((...))))(.(((.((((....)).((((((((.((((((((.-....--------.)))))))))))))))))).))).).......... ( -33.80)
>DroAna_CAF1 3810 79 + 1
AGGGCUGGAAGAUGGGGG---CGUGGAACCUGUUAUGGUUUAGU-------------GGACAAAUUGAUUGGCCAUAAGCCCG--GGAGUCUCUGGA
....(..((.(((..(((---(...(((((......))))).((-------------((.(((.....))).))))..)))).--...)))))..). ( -24.20)
>consensus
AGAGAUUAAAGAUCGGGGCCGCGGGGAACCAGUUAUGGCUCAGUUAGUC_CAUAAGCGAGCAAAUUGAUUGGCCAUAAUACCGCCACAACUUUUGGC
..............((..((....))..)).((((((((.((((((((...............))))))))))))))))...((((.......)))) (-18.47 = -19.44 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:09 2006