Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,951,376 – 12,951,490 |
Length | 114 |
Max. P | 0.513408 |
Location | 12,951,376 – 12,951,490 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -21.20 |
Energy contribution | -22.87 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12951376 114 + 22224390 AUGAUGAUCAUUGCCAGCUAUCGUUGU-UAGCAUCU-CGGGUGCCAUUAGCCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUUAUUUCACU (((((((....((..(((....((((.-..((((..-...))))...)))).)))..))(((((((((..((((.((....))...)))).))))))))))))))))......... ( -28.80) >DroEre_CAF1 8960 108 + 1 AUGACGAUCAGUGCCU-UUAUCGUUGUGCAGCAUCU-UGGGUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAGCGCUCAC------UUCGAU ....(((..(((((.(-(((((((((...(((..((-..(....)...))..)))..))))))))))........((((((.(....).)))))).)))))...------.))).. ( -30.20) >DroYak_CAF1 9346 114 + 1 AUGAUGAUCAUUGCCA-UUAUCGUUGU-CAGCAUCUCUGGUUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUUUUUUCAGU (((((((.(.......-(((((((((.-.(((..((.(((...)))..))..)))..))))))))).........((((((.(....).))))))...).)))))))......... ( -29.20) >consensus AUGAUGAUCAUUGCCA_UUAUCGUUGU_CAGCAUCU_UGGGUCCCAUUAGUCGCUAUCAGCGAUGAAAACUGUUAGAAAUUUCGAGAGCAAUUUCAUCGCUCAUCAUU_UUUCAAU .((((((.(........(((((((((...(((..((...(....)...))..)))..))))))))).........((((((.(....).))))))...).)))))).......... (-21.20 = -22.87 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:56 2006