Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,944,393 – 12,944,487 |
Length | 94 |
Max. P | 0.500000 |
Location | 12,944,393 – 12,944,487 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 69.18 |
Mean single sequence MFE | -28.34 |
Consensus MFE | -3.86 |
Energy contribution | -3.58 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -1.78 |
Structure conservation index | 0.14 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12944393 94 + 22224390 ACAGUGACCGCUUGGAAAGUAUAACUUGUUGAUUGGGCGGUUUCUAAGGGG-AAACUAGAAGUCUC-------------AUUAUGGGGAACACGUGUUGUGCCCAGGA ..((.(((((((..(.(((.....))).....)..))))))).))...(((-.(((......((((-------------......))))......)))...))).... ( -24.70) >DroSec_CAF1 3057 83 + 1 ACAGUG---------AAGGUAUAACUUGUUGAUUGGGCGGUUUCUAG--GG-AAACUAGAUGUCUC-------------AUUAUGAGACACACGUGUGUUGCCCAGGA .(((..---------(.(......))..))).((((((((..(((((--..-...)))))((((((-------------.....))))))........)))))))).. ( -25.70) >DroSim_CAF1 3156 81 + 1 ACAGUGACCGCUCGGAAAGUAUAACUUGUUGAUUGGGCGGUUUCUAC--GG-AAACUAGAAGUCCC-------------AUUAUGGGACACACGUGU----------- (((((((((((((((.(((.....))).....)))))))))(((((.--(.-...))))))(((((-------------.....))))).))).)))----------- ( -29.40) >DroEre_CAF1 2922 99 + 1 ACAGUGGCCGCUCGGAAACUAUAACUUGUUGAUUAGAGGGUUUCUGG--GC------AGACUUGGCAGACUUCUAUCUAAUAAUGGGGCACACGUGUGGC-CCCAGGA ..(((.((((((((((((((.((((.....).)))...)))))))))--))------......)))..)))............((((((.((....))))-))))... ( -32.50) >DroYak_CAF1 3289 91 + 1 ACAGUGCCCGCUCGAGAACUACAACUUGUUGAUUAGAAGGUUUCUGG--GUGCCACUAGAUGUGGC-------------AUAAUGGGGCACACGUGCUGU--CCAGGA ...(((((((((((..((((....((........))..))))..)))--))(((((.....)))))-------------......)))))).........--...... ( -29.40) >consensus ACAGUGACCGCUCGGAAAGUAUAACUUGUUGAUUGGGCGGUUUCUAG__GG_AAACUAGAAGUCGC_____________AUUAUGGGGCACACGUGUGGU_CCCAGGA ...(((.((............(((....)))..((((.....)))).......................................)).)))................. ( -3.86 = -3.58 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:48 2006