Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,928,142 – 12,928,254 |
Length | 112 |
Max. P | 0.982523 |
Location | 12,928,142 – 12,928,254 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -31.74 |
Consensus MFE | -20.29 |
Energy contribution | -20.37 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.42 |
Structure conservation index | 0.64 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982523 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12928142 112 + 22224390 UGGUAUCGAUAGCUUUU-CAUCUGGUAUC--AGGGUUCCAUUGACGUGGAGAACCUUUGCGAUUUGCAAGGCAUUCCCGCACUACGUGAGUUUCCUAUCGAUAUCGAA-----GAACUCG .(((((((((((...((-(((.((((.((--(((....).)))).((((.(((.((((((.....))))))..))))))))))).)))))....)))))))))))...-----....... ( -36.60) >DroSec_CAF1 4818 86 + 1 UGGUAUCGAUACCUUUU-CAUCUGGUAUC--AGGGUUCCAUUGACGUGGAA--------------------------CUCACUACGUGAGUUUCCUAUCGAUAUCGAA-----GAACUCG .((((((((((....((-(((.((((...--.(((((((((....))))))--------------------------))))))).))))).....))))))))))...-----....... ( -29.40) >DroSim_CAF1 4770 111 + 1 UGGUAUCGAUACCUUUU-CAUCUGGUAUC--AGGGUUCCAUUGACGUGGAGAACGUUUGCGAUUUGCAAGGCAUUU-CGCACUACGUGAGUUUCCUAUCGAUAUCGAA-----GAACUCG .((((((((((((....-.....))))))--((((((((((....)))))).((((.(((((..(((...)))..)-))))..)))).....))))...))))))...-----....... ( -36.60) >DroEre_CAF1 4573 116 + 1 UGGUAUCGAUACCUUUC-CAUCUGGUAUC--AGGGCUCCAUUGACGUGGAUACCGUACUCGAUUUAAAAGACAUUC-CGCACUACGUGAGUUCCCUAUCGAUAUCGCAGCACAGAACACC .((((((((((.((((.-.(((.(((((.--.((..(((((....)))))..))))))).)))...))))..((((-((.....)).))))....))))))))))............... ( -27.70) >DroYak_CAF1 4585 101 + 1 -GAUAUCGAUACAUUUCUCAUCUGGUAUCACAGGGUUCCAUUGACGUGGA------------UUUCAAAGACAUUC-CGCACUACGUGAGUUUCCUAUCGAUAUCGAA-----GAACACC -((((((((((.....(((((.((((.(((...(....)..))).(((((------------............))-))))))).))))).....))))))))))...-----....... ( -28.40) >consensus UGGUAUCGAUACCUUUU_CAUCUGGUAUC__AGGGUUCCAUUGACGUGGAGA_C_U___CGAUUUGAAAGACAUUC_CGCACUACGUGAGUUUCCUAUCGAUAUCGAA_____GAACUCG .((((((((((((..........))))))..((((....(((.((((((................................)))))).))).))))...))))))............... (-20.29 = -20.37 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:48 2006