Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,926,879 – 12,926,990 |
Length | 111 |
Max. P | 0.736271 |
Location | 12,926,879 – 12,926,990 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.36 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -13.51 |
Energy contribution | -13.91 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.76 |
Structure conservation index | 0.71 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12926879 111 + 22224390 AUAACCACUUGUUCUCAAGCACUUUACACGUACAAUAAACUCUAAAAAAAACCAUUAGUAAUGUGCCAAGCUGCUGUGGUUAUCA----GAAUACUAAACAAAACUAUUAAUAAA----- ((((((((.((....))(((((((..(((((((........................)).)))))..))).))))))))))))..----..........................----- ( -16.26) >DroSec_CAF1 3565 118 + 1 GUAACCACUUGUUCUCAAGCACUUUACAC-CACAAUAAACUCAGA-AAAAACAAUUAGUAAUGUGCCAAGCAGCUGUGGUUAUCAUUUUGAUAACUAAAAAGAACUAUUCAUAAACUUCG ..........(((((...((((.((((..-...............-...........)))).))))..........((((((((.....))))))))...)))))............... ( -17.69) >DroSim_CAF1 3524 114 + 1 AUAACCACUUGUUCUCAAGCACUUUACAC-CACAAUAAACUCUGA-AAAAACCAUUAGUAAUGUGCCGAGCAGCUGUGGUUAUCA----GAAUACUAAAUAGAACUAGUAAUAAACUUCA ((((((((..((((((..((((.((((..-...............-...........)))).)))).))).))).))))))))..----...(((((........))))).......... ( -22.69) >DroEre_CAF1 3383 114 + 1 GUAACCACUUGUUCUCAAGCACUUAACAU-UACAAUUAACUCUCA-AAAAACAAUUAGUAAGGUGCCAAGCUGCUGUGGUUAUAA----AAAUGCUUAGUAAAACAAUUAAUAAUCUUGG ((((((((..((......((((((.((..-...............-...........)).))))))......)).))))))))..----............................... ( -16.99) >DroYak_CAF1 3376 114 + 1 AUAACCACUUGUUCUCAAGCACUUUGCAU-AACAUUUAACUCUCA-AAAAGGUAUUAGUAUUAUGCCAAGCUGCUGUGCUUAUAA----GAAGGUUAAAUAAAACAACUAAUAAUCUUCG .(((((.(((((.....(((((((.((((-((.(((..(((....-....)))...))).)))))).))).))))......))))----)..)))))....................... ( -21.60) >consensus AUAACCACUUGUUCUCAAGCACUUUACAC_CACAAUAAACUCUCA_AAAAACAAUUAGUAAUGUGCCAAGCUGCUGUGGUUAUCA____GAAUACUAAAUAAAACUAUUAAUAAACUUCG ((((((((..((......((((.((((..............................)))).))))......)).))))))))..................................... (-13.51 = -13.91 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:47 2006