Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,926,538 – 12,926,639 |
Length | 101 |
Max. P | 0.856319 |
Location | 12,926,538 – 12,926,639 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 73.33 |
Mean single sequence MFE | -22.57 |
Consensus MFE | -12.63 |
Energy contribution | -14.53 |
Covariance contribution | 1.90 |
Combinations/Pair | 1.20 |
Mean z-score | -1.92 |
Structure conservation index | 0.56 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12926538 101 + 22224390 ACCGAUCCGAUAAUGUAUUCCAUCUUAUCAUAUAUGUAAUGAACAUUUGGAUUUUUCCAAUUGUGGUAGCUAAAAGCUUUUAAGAAGGGUGGAAUUUCUAA---- ................((((((((((.((.............(((.(((((....))))).)))...(((.....))).....))))))))))))......---- ( -21.20) >DroSec_CAF1 3218 104 + 1 ACCGAUCCGAUAAUGUAUUCCAUGUUAUC-UACAUGUAAUGCACAUUUGGAUUUUUUCAAUUGUGGUAGCCAAAAGCUUUCAAGAUGGUUGAAAUUUCUAAAACA ...(((((((...((((((.(((((....-.))))).))))))...))))))).((((((((.(((.(((.....))).)))....))))))))........... ( -25.80) >DroYak_CAF1 3078 97 + 1 AAUAU--------GGAAUUCUACGUUAUCAUUUAUGAUAUGCAUAUUUGGAUUUUCCCAAUUGUGGUAGUCGAAGGCUUUUAACUUUGUUGGAAUUUCCAAAACA ....(--------((((..((((..(((((....)))))..((((.((((......)))).)))))))).(((((........))))).......)))))..... ( -20.70) >consensus ACCGAUCCGAUAAUGUAUUCCAUGUUAUCAUAUAUGUAAUGCACAUUUGGAUUUUUCCAAUUGUGGUAGCCAAAAGCUUUUAAGAUGGUUGGAAUUUCUAAAACA ..............(((((.(((((......))))).)))))...((((((...((((((((.(((.(((.....))).)))....))))))))..))))))... (-12.63 = -14.53 + 1.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:46 2006