Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,423,545 – 1,423,654 |
Length | 109 |
Max. P | 0.516471 |
Location | 1,423,545 – 1,423,654 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 72.62 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -17.09 |
Energy contribution | -18.21 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.77 |
Structure conservation index | 0.53 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1423545 109 - 22224390 AGCAAGUGCCUAGAUGCAUGACGAUACAUAUGUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUUCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG-AGGAAAG .(((...(((((((((...((((.(((....)))..)))))))))))))(((.(((..(((((.......)))))..)))))).))).........((((..-.)))).. ( -32.00) >DroSec_CAF1 30006 105 - 1 AGCAAGUGCCUAGAAACAUGA----ACAUACGUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUCCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG-AGGAAGA .(((...(((((((.(((((.----((....)).)))))...)))))))(((.(((..(((((.......)))))..)))))).))).......((((((..-.)))))) ( -35.60) >DroEre_CAF1 25198 88 - 1 UGCAAGUGUCUGGAUGC----------------ACAAAUCCGUCUAGGCGAACAGAUCGCAGGCAUUCCUCCUGCACUCGCAGUU------GUGUCUUCCAGCAGCAAAG (((...((.(((((.((----------------((((....((((..((((.....)))))))).......((((....))))))------))))..))))))))))... ( -28.70) >consensus AGCAAGUGCCUAGAUGCAUGA____ACAUA_GUACAUGUCCGUCUAGGUGGACAGAUCGCAGGCAUUCCUCCUGCACUCUUCCAUGCCAGCCAGUCUUCCCG_AGGAAAG ....((((((((((((((((..............)))))..)))))))).........(((((.......))))))))..................((((....)))).. (-17.09 = -18.21 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006