Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,924,355 – 12,924,462 |
Length | 107 |
Max. P | 0.667896 |
Location | 12,924,355 – 12,924,462 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 87.01 |
Mean single sequence MFE | -27.64 |
Consensus MFE | -19.34 |
Energy contribution | -19.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.95 |
Structure conservation index | 0.70 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12924355 107 + 22224390 CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUUAAUAUCUUUUUUCGUGCCUAUCGAUGGUUUGCAAAACAUCGGCACCUCAGAAACAGUUUUCGAA ..((((((((..((((((((((((......(((((...................))).)))))))))))))))))).......(....).............)))). ( -24.91) >DroSec_CAF1 1055 107 + 1 CAUCGAUGCAUCAGCCAUCAAUGGUUCUUCGUCGAUAAUUCUCAAUAUCUGUUUUGGUGCCUAUCGAUGGUUAGCAAAACAUCGGCACCUCAGAAAUAGUUUUGGAA .(((((((.(..(((((....)))))..))))))))..(((.(((...(((((((((((((....((((..........))))))))))...)))))))..)))))) ( -31.80) >DroSim_CAF1 1085 107 + 1 CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUCAAUAUCUGUUUUGGCGCCUAUCGAUGGUUAGCAAAACAUCGGCACCUCAGAAAUAGUUUUGGAA ..((((((....((((((((((((.....((((((..................)))))).)))))))))))).......))))))....((((((....)))))).. ( -29.27) >DroEre_CAF1 1040 107 + 1 CAUCGAUGCAUCAGCCAUCGAUGGUCUUCUGCCGAUAUUUGUCGAUAUCUGUUUUGGUGCCUAUCGAUGCUUUGCAAAACAUCGGUUCGUUAGAAAACGUUUUUGAA ......((((..(((.(((((((((((...((.((((((....)))))).))...)).))).))))))))).)))).....((((..((((....))))...)))). ( -27.60) >DroYak_CAF1 1062 107 + 1 CAUCGAUGCAUCUGCCAUCGAUGGUUCUUUGUCGAUAUUUCUCGAUAUCUGUUUUGGUGUCUAUCGAUGUUUUGCAAAUCAUCGGCUCCUUUAACAACGUUUUUGAA ..((((((.((.((((((((((((..((.((((((......))))))........))...)))))))))....))).))))))))...................... ( -24.60) >consensus CAUCGAUGCAUCAGCCAUCGAUGGUUCUUCGCCGAUAAUUCUCAAUAUCUGUUUUGGUGCCUAUCGAUGGUUUGCAAAACAUCGGCACCUCAGAAAAAGUUUUGGAA (((((((((....).)))))))).......(((((((..(..(((........)))..)..))))((((..........)))))))..................... (-19.34 = -19.10 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:43 2006