Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,924,006 – 12,924,099 |
Length | 93 |
Max. P | 0.884816 |
Location | 12,924,006 – 12,924,099 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.52 |
Mean single sequence MFE | -21.96 |
Consensus MFE | -17.72 |
Energy contribution | -18.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.81 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884816 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12924006 93 + 22224390 GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG ............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50) >DroSec_CAF1 706 92 + 1 GUUGUUUGCCAAGGG-GGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG ............(((-(((((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50) >DroSim_CAF1 735 93 + 1 GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG ............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... ( -20.50) >DroEre_CAF1 691 91 + 1 GUUGUUUGUCGGGGGG--GCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACA ..(((.(((.(((((.--(((((...((.......................))...)))))....(((.((....))))).)))))))).))) ( -23.50) >DroYak_CAF1 705 93 + 1 UUUGUUUGUCGGGGGGGAGCACAAAAACGAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACAAA ....(((((..(((((..(((((....((....)).......((........))..)))))....(((.((....))))).)))))..))))) ( -24.80) >consensus GUUGUUUGCCAAGGGGGGGCACAAAAACAAAAUCGAAAAAAGGAAAACACAGUCACUGUGCAUUAGAGAGAGACAUCCUCACCCCCACACACG ............(((((.(((((...((.......................))...)))))....(((.((....))))).)))))....... (-17.72 = -18.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:42 2006