Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,923,848 – 12,923,956 |
Length | 108 |
Max. P | 0.705821 |
Location | 12,923,848 – 12,923,956 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.69 |
Mean single sequence MFE | -28.89 |
Consensus MFE | -26.02 |
Energy contribution | -26.77 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.90 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12923848 108 - 22224390 GUGUGCCGCCGAACAACAACAACAUCAGCGACAAAAC---AAACAGGGCGCACAGCAAAACAAUUCACACACACACGCACCCUCCCCCGCCUGCGCGCGCUUGUGUGUGUG (((((((((.((............)).))(......)---......)))))))............(((((((((((((.(.(..........).).)))..)))))))))) ( -29.70) >DroSec_CAF1 545 111 - 1 GUGUGCCGCCGAACAACAACAACAUCAGCGACAAAACAACAAGCAGGGCGCACAGCAAAACAAUUCACACACACACACACCCUCCCCCGCCUGCGCGCGCUUGUGUGUGUG (((((((...((............)).((.............))..)))))))................((((((((((........(((....)))....)))))))))) ( -27.92) >DroSim_CAF1 574 111 - 1 GUGUGCCGCCGAACAACAACAACAUCAGCGACAAAACAACAAGCAAGGCGCACAGCAAAAGAAUCCACACACACACGCACCCUCCCCCGCCUGCGCGCGCUUGUGUGUGUG (((((((...((............)).((.............))..)))))))............(((((((((((((.(.(..........).).)))..)))))))))) ( -30.12) >DroEre_CAF1 535 106 - 1 GUGUGCCGCCGAACAAC---AACAUCAGCGACAAAACAACAAGCAGGGCGCACAGCAAAACAAUUCACAC--ACACGCACCCUCCCCCGCCUGCGCGCGCCUGUGUGUGUG (((((((...((.....---....)).((.............))..)))))))..............(((--(((((((........(((....)))....)))))))))) ( -27.82) >consensus GUGUGCCGCCGAACAACAACAACAUCAGCGACAAAACAACAAGCAGGGCGCACAGCAAAACAAUUCACACACACACGCACCCUCCCCCGCCUGCGCGCGCUUGUGUGUGUG (((((((((.((............)).))(......).........)))))))............((((((((((.((.........(((....))).)).)))))))))) (-26.02 = -26.77 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:41 2006