Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,915,008 – 12,915,104 |
Length | 96 |
Max. P | 0.701986 |
Location | 12,915,008 – 12,915,104 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.77 |
Mean single sequence MFE | -17.42 |
Consensus MFE | -11.74 |
Energy contribution | -12.47 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12915008 96 - 22224390 CAUCAUCACUCAAUUCAUCAA-ACAAACAAACAA--CGAACCAACCAAACAGGCUGGUUCAACACUCUUGCCGGUGCCAUGAAGCGACAGUUUGCCACC .....................-.....(((((..--.((((((.((.....)).))))))..((((......)))).............)))))..... ( -17.30) >DroSec_CAF1 645 96 - 1 CAUCAUCACUCAAUUCAUCAA-ACAAACAAACAA--CGAACCAACCGAACAGGCUGGUUCAACACUCUUGCUGGUGCCAUGAAGCGACAGUUUGCCACC .....................-.....(((((..--.((((((.((.....)).)))))).......(((((..........)))))..)))))..... ( -19.20) >DroSim_CAF1 645 96 - 1 CAUCAUCACUCAAUUCAUCAA-ACAAACAAACAA--CGAACCAACCAAACAGGCUGGUUCAACACUCUUGCUGGUGCCAUGAAGCGACAGUUUGCCACC .....................-.....(((((..--.((((((.((.....)).)))))).......(((((..........)))))..)))))..... ( -18.50) >DroEre_CAF1 660 90 - 1 CAUCAUCACUCAAUCCAUCAA-ACAAA-----AA--CGAACC-ACCAAACAGGCUGGUUCAACACACUUGCCGGUGCCAUGAAGCGACAGUUUGCCACC ..................(((-((...-----..--.(((((-(((.....)).))))))....((((....)))).............)))))..... ( -16.20) >DroYak_CAF1 664 94 - 1 CAACAUCACUCAAUUCAUCAAAACAAA-----AAUGCGAACCAACCGAACAGGCUGGUUCAACACACUGGCCGGUGCCAUGAAGCGACAGUUUGCCACC .......................((((-----..(((((((((.((.....)).))))))....((.((((....))))))..)))....))))..... ( -20.30) >DroMoj_CAF1 806 78 - 1 -----------------CACA-UCAAUC-AUGAA--UCCAUCAAUCAAACAGGCUGGUUCAAUACACUCGCCGGCGCCAUGAAGCGACAAUUUGCGACC -----------------....-((..((-(((..--.........(.....)((((((...........))))))..))))).((((....)))))).. ( -13.00) >consensus CAUCAUCACUCAAUUCAUCAA_ACAAAC_AACAA__CGAACCAACCAAACAGGCUGGUUCAACACACUUGCCGGUGCCAUGAAGCGACAGUUUGCCACC .....................................((((((.((.....)).))))))............((((.((...(((....))))).)))) (-11.74 = -12.47 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:39 2006