Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,901,950 – 12,902,054 |
Length | 104 |
Max. P | 0.598483 |
Location | 12,901,950 – 12,902,054 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -20.77 |
Energy contribution | -21.47 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.12 |
Mean z-score | -1.07 |
Structure conservation index | 0.79 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598483 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12901950 104 + 22224390 AUAUUUAAUAUACAUUGCA--AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACUCCCGGCUACUGGAUCGAAUGCUCCCGCCAG ............(((((((--((.....)))))).)))......(((.(((((((.((....(((((..(((.......)))...))))))).))))))))))... ( -26.60) >DroSim_CAF1 86611 102 + 1 --AUAUAAUAUACAUUGCA--AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACUCCCGGCUACUGGAUCGAGUGCUCCCGCCAG --..........(((((((--((.....)))))).)))......(((.((((((..((....(((((..(((.......)))...)))))))..)))))))))... ( -27.20) >DroEre_CAF1 99435 88 + 1 --------UAUA----------AAAUGCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCGGGUUACUGGAUCGAGUGCUCCCGCCAG --------....----------....((.(((((((.....)))))))((((((..((....(((((..((((.....))))...)))))))..)))))).))... ( -28.90) >DroYak_CAF1 112488 88 + 1 --------UAUA----------AAAUGCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCGGGCUACUGGAUCGAGUGCUCCCGCCAG --------....----------....((.(((((((.....)))))))((((((..((....(((((..((((.....))))...)))))))..)))))).))... ( -30.50) >DroAna_CAF1 117526 100 + 1 --AAA-GAAAAACAUUACU--A-AUCAAAUUUCAGAUGAGUUCUGUGAGGAGUAUCCACACAAUCUCAUGCCCACGCCGGGCUACUGGAUCGAGUGCUCCAGGCAG --...-.............--.-.......((((((((((...((((.((.....)).))))..)))))((((.....))))..))))).....(((.....))). ( -25.40) >DroPer_CAF1 162442 94 + 1 -----------AC-CUUCAAUAUCAUCCAUUCCAGAUGAGUUCUGCGAGGAGUAUCCACAUAACCUAAUGCCCACGCCCGGCUACUGGAUCGAAUGCUCGCGCCAG -----------..-........(((((.......)))))(((..(((.((.((((............)))))).)))..)))..((((..(((....)))..)))) ( -19.10) >consensus ________UAUAC_UU_CA__AUAACCCAUUGCAGAUGAGUUCUGCGAGGAGUAUCCGCACAAUCUGAUGCCCACGCCCGGCUACUGGAUCGAGUGCUCCCGCCAG .............................(((((((.....)))))))(((((((.((....(((((..(((.......)))...))))))).)))))))...... (-20.77 = -21.47 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:37 2006