Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,423,164 – 1,423,268 |
Length | 104 |
Max. P | 0.842784 |
Location | 1,423,164 – 1,423,268 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 93.95 |
Mean single sequence MFE | -39.20 |
Consensus MFE | -31.99 |
Energy contribution | -34.80 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.27 |
Structure conservation index | 0.82 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1423164 104 + 22224390 CAGUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG ...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.40) >DroSec_CAF1 29581 104 + 1 CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG ...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.30) >DroSim_CAF1 22631 104 + 1 CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA------UGGCAGUGCAAGUAGCUCGGCAUGG-GGCAGUAUCUACGGAUGCGGGG ...((.(..((((((((.((((((((...(((......)))..((.(((.......)------)).)))))))))).))))))))...-).))(((((....))))).... ( -39.30) >DroEre_CAF1 24800 111 + 1 CACUGGCUUUGCUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAAUGGCAAUGGCAAUGCAAGUAGCUCGGCAUGGGGGCAGUAUCUACGGAUGGGGAG .((((.(((((((((((.(((((((....(((......)))..((.(((....((....)).))).)).))))))).))))))))..))).))))(((....)))...... ( -38.80) >consensus CACUGGCAUUGUUGAGCAAUUUGCGCACAGCUUUCUAUGGCAAUGGCAUAAUGGCAA______UGGCAGUGCAAGUAGCUCGGCAUGG_GGCAGUAUCUACGGAUGCGGGG .....((..((((((((.((((((((...(((......)))....((......)).............)))))))).)))))))).....)).(((((....))))).... (-31.99 = -34.80 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:56 2006