Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,865,682 – 12,865,778 |
Length | 96 |
Max. P | 0.924215 |
Location | 12,865,682 – 12,865,778 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 75.88 |
Mean single sequence MFE | -37.92 |
Consensus MFE | -28.33 |
Energy contribution | -26.25 |
Covariance contribution | -2.08 |
Combinations/Pair | 1.44 |
Mean z-score | -1.42 |
Structure conservation index | 0.75 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.924215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12865682 96 + 22224390 CUGCCCAUCAUGUCGCACCAAGUGGGUUUGGUGUGGCAGGGCGGCAACGGCUGGGACGAUCUUGUGCGGGAGCAGGUGGGUCGCAC---UAAUUCGCAA------ ((((((....((((((((((((....))))))))))))))))))...(((.(((..(((((((.(((....))).).))))))..)---))..)))...------ ( -41.30) >DroVir_CAF1 127663 102 + 1 CUGCCCAUAAUGUCGCAUCAGGUUGGUCUGGUGUGGCAGGGCGGCAAUGGCUGGGACGACUUGGUGCGCGAACAGGUUAGUCAAGC---UCAUGGCCUAAGCCCC ..((((....((((((((((((....))))))))))))))))(((.((((((..(((((((((.........)))))).))).)))---.))).)))........ ( -43.70) >DroPse_CAF1 122022 93 + 1 CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGUCAGGUGGCAACGGCUGGGAUGACCUCGUCCGCGAACAGGUGAGUGG-AC---UCUGUCCU-------- ..((.((((.((((((((((((....)))))))))..(((.((....)).)))(((((....)))))....))))))).))((-((---...)))).-------- ( -35.90) >DroWil_CAF1 78554 91 + 1 CUGCCCAUUAUGUCACACCAGGUAGGCCUGGUGUGGCAAGGUGGCAAUGGCUGGGACGAUUUGGUGCGCGAACAGGUAAGUAA-AC---AUCUUC---------- .((((.((..((((((((((((....))))))))))))..)))))).((.(((...((........))....))).)).....-..---......---------- ( -33.30) >DroAna_CAF1 76777 99 + 1 CUGCCCAUCAUGUCGCACCAAGUGGGUUUGGUGUGGCAGGGCGGCAACGGCUGGGACGAUCUUGUCCGGGAACAGGUAAGUUCUUAAAAUAUUUAAGGA------ ((((((....((((((((((((....))))))))))))((.((....)).)).(((((....))))))))..))).....(((((((.....)))))))------ ( -37.40) >DroPer_CAF1 99784 93 + 1 CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGUCAGGUGGCAACGGCUGGGAUGACCUCGUCCGCGAACAGGUGAGUGG-AC---UCUGUCCU-------- ..((.((((.((((((((((((....)))))))))..(((.((....)).)))(((((....)))))....))))))).))((-((---...)))).-------- ( -35.90) >consensus CUGCCCAUCAUGUCGCACCAGGUGGGUCUGGUGUGGCAAGGCGGCAACGGCUGGGACGACCUCGUCCGCGAACAGGUGAGUCG_AC___UCUUUCCC________ ...(((....((((((((((((....))))))))))))((.((....)).)))))...((((.((......))))))............................ (-28.33 = -26.25 + -2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:29 2006