Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,857,993 – 12,858,091 |
Length | 98 |
Max. P | 0.830045 |
Location | 12,857,993 – 12,858,091 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.23 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -23.61 |
Energy contribution | -22.95 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.15 |
Mean z-score | -2.44 |
Structure conservation index | 0.82 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830045 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12857993 98 - 22224390 GAACGGAAAAGGGGGCGGCGAAA-AAGCAAAAGCCGCAACAAAAACAAGCAGGCGAAAGAUGAAACUCGUUUUGGCCUUUUUCUGGUUACAAAACGCGC ...((((((((((.(((((....-........)))))..(((((.....((..(....).)).......))))).)))))))))).............. ( -27.90) >DroSec_CAF1 56323 99 - 1 GGACGGGAAAAGGGGCGGCGAAAAAAGCAGAAGCCGCAAGAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC ...((.(.......(((((.............)))))......(((.(((((((..((((((.....)))))).)))...)))).)))......).)). ( -27.02) >DroEre_CAF1 60319 96 - 1 AAACGGAAGAGGGCGCGGCGGAAAG---AGAAGCCGCAACAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC ...(....)...(((((((((....---.....))))......(((.(((((((..((((((.....)))))).)))...)))).)))......))))) ( -31.10) >consensus GAACGGAAAAGGGGGCGGCGAAAAAAGCAGAAGCCGCAACAAAAACAAGCAGGCGAAAGACGAAACUCGUUUUGGCCUUUUGCUGGUUACAAAACGCGC ...(((.((((((.(((((.............)))))...................((((((.....))))))..)))))).))).............. (-23.61 = -22.95 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:25 2006