Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,852,151 – 12,852,249 |
Length | 98 |
Max. P | 0.928525 |
Location | 12,852,151 – 12,852,249 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 66.70 |
Mean single sequence MFE | -18.02 |
Consensus MFE | -10.86 |
Energy contribution | -10.22 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.43 |
Mean z-score | -1.69 |
Structure conservation index | 0.60 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12852151 98 + 22224390 CACCGAUUACCCCGCAUU------------UCCCCCAAUUU------UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUGCAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA ..................------------...........------............((((((.((....(((..((((((.....))))))..)))..))....))))))... ( -15.50) >DroSec_CAF1 51126 109 + 1 CACCGAUUUCCCCGCAUUUCCCUG-CCAUUUCCCCCAAUUU------UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA .............(((......))-)...............------............((((((.((....(((..((((((.....))))))..)))..))....))))))... ( -17.00) >DroEre_CAF1 55631 90 + 1 C------------------CCCUG-CCUU-UCCCCCAAUUU------UCCUUCCGUUUGUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCCUUCGCAUAUUA .------------------.....-....-...........------...........(((((((.((....(((..((((((.....))))))..)))..))....))))))).. ( -16.50) >DroMoj_CAF1 95405 100 + 1 C---------CUCUGU-CCCCCUCUCCGUCCCCCUCACAGC------UCAUGCAUGAUCUAUGCGUGUUUAUUAACGUGCACAUUAUUUGUAUACACGAGUGGCUUUUGCAUAUUA .---------......-..................(((...------.((((((((...))))))))........((((.(((.....)))...)))).)))((....))...... ( -16.20) >DroPer_CAF1 77962 85 + 1 -------------------------------GGCCCCAUCUGCGGGCCCCUUCCGGGUCUGGGCGUGUUUAUCUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA -------------------------------(((...(((..(((((((.....)))))))((((........))))((((((.....))))))...))).)))............ ( -24.90) >consensus C_________C_C______CCCU__CC_U_UCCCCCAAUUU______UCCUUCCGUUUCUGUGCGUGCUUAUUUGCCUGUACAUUAUUUGUACACACGAUUGCCUUUCGCAUAUUA ...........................................................((((((.((......)).((((((.....)))))).............))))))... (-10.86 = -10.22 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:24 2006