Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,849,580 – 12,849,680 |
Length | 100 |
Max. P | 0.611015 |
Location | 12,849,580 – 12,849,680 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 82.04 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -17.30 |
Energy contribution | -19.13 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.17 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12849580 100 - 22224390 GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAAGAGCAUUGUUUGACAGCUGUCAACUGACAAAUCU-CCCCAUCCCCUAGCCCAUAUUCU ...((((........((((..((.((((.((((((.-..)))))).))))))..)).))..((((....)))).....-............))))....... ( -24.80) >DroSec_CAF1 48665 96 - 1 GCCGGGUUAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU ...((((......(((((((....)))))))((((.-..))))((((..(((((((((....)))))...))))..))-))......----))))....... ( -25.00) >DroSim_CAF1 57600 96 - 1 GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAAGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU (((((........(((((.(((.((((((...))))-.)).)))..)))))..(((((....))))))))))......-........----........... ( -24.60) >DroEre_CAF1 53200 96 - 1 GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCG-CUGCGAGCAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU-CCCCAUCU----GCCCAUAUUCU ...((((.....((((((((....))))))))...(-((((((((......))))).))))((((....)))).....-........----))))....... ( -27.00) >DroYak_CAF1 56532 91 - 1 GCCGCGACAUUAAAAUGCAUUCACAUGCGUUUCGCA-CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCUUCCCCAUCU----------AUUCU (((((..(.....(((((((....)))))))((((.-..)))))..)).....(((((....)))))..)))...............----------..... ( -21.60) >DroAna_CAF1 57731 77 - 1 GCCGAGCCAUUAAAAUGCAUUCACAUGCGUUUCGCAAAUGCU---CGCAUUGUUUGACAGCUAUCCU------------------UA----GUCCUUAGUCC ((.((((.(((.((((((((....))))))))....))))))---))).....((((..((((....------------------))----))..))))... ( -15.50) >consensus GCCGGGCCAUUAAAAUGCAUUCACAUGCGUUUCGCA_CUGCGAGGAGCAUUGUUUGACAGCUGUCAACUGGCAAAUCU_CCCCAUCU____GCCCAUAUUCU ...((((........((((..((.((((.((((((....)))))).))))))..)).))..((((....))))..................))))....... (-17.30 = -19.13 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006