Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,843,293 – 12,843,388 |
Length | 95 |
Max. P | 0.994283 |
Location | 12,843,293 – 12,843,388 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -19.75 |
Consensus MFE | -15.71 |
Energy contribution | -16.27 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.57 |
Structure conservation index | 0.80 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12843293 95 - 22224390 UUGUUCAGGUAAACAAAGACUUUCUUGAAAACUUUCAUUU---GGAAUUUGUUUGCCGCGUCGCUUUUGCGAUUUGUUUUUUUUUUUUUACAUAUUUU--- .......((((((((((..((....((((....))))...---))..))))))))))..(((((....))))).........................--- ( -21.10) >DroSim_CAF1 51374 85 - 1 UUGUUCAGGUAAACAAAGACUUCCAUGAAAACUUUCAUUU---GGACUUUGUUUGCUGCGUCGCUUUUGCGAUUUU----------UUUACAUUUAUU--- .......(((((((((((...((((((((....))))..)---))))))))))))))..(((((....)))))...----------............--- ( -22.40) >DroEre_CAF1 47317 88 - 1 UUGUUCAGGUAAACAAAGACUUCGCCGAAAACUUUCAUUUGCCGGAAUUUGGUUGCCGCGUCGCUUUUGCAAUAUU----------UGUAUCUAUUUU--- .......(((((.((((...((((.((((........)))).)))).)))).)))))(((.......)))......----------............--- ( -14.50) >DroYak_CAF1 50363 89 - 1 UUGUUCAGGUAAACAAAGACUUUGCUGAAAACUUUCAUUU--UGGAAUUUGUUUGCCACGUCGCUUCUGCGAUUUU----------UAUACUUUUUUUUUU .......((((((((((..((..(.((((....)))).).--.))..))))))))))..(((((....)))))...----------............... ( -21.00) >consensus UUGUUCAGGUAAACAAAGACUUCCCUGAAAACUUUCAUUU___GGAAUUUGUUUGCCGCGUCGCUUUUGCGAUUUU__________UUUACAUAUUUU___ .......((((((((((..((....((((....))))......))..))))))))))..(((((....)))))............................ (-15.71 = -16.27 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:20 2006