Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 12,826,848 – 12,826,968 |
Length | 120 |
Max. P | 0.731781 |
Location | 12,826,848 – 12,826,968 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -21.90 |
Energy contribution | -22.57 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.59 |
Structure conservation index | 0.80 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12826848 120 - 22224390 CAUUAAUAAUUCGGUGUAACUAUAGCUAUAUACGAAACUUUUCGGAUGUAUCGCAAUAAUUAUAGAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA .........(((.((((((((......................((.(((((((((...........)))))))))))(((((...........)))))........)))).)))).))). ( -28.60) >DroSec_CAF1 24833 114 - 1 CAUAAAUAAUUCGGUA------UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA .........(((.((.------((((((...(((.........((.(((((((((...........)))))))))))(((((...........)))))...))).))))))..)).))). ( -24.60) >DroSim_CAF1 34522 114 - 1 CAUAAAUAAUUCGGUG------UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCUCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA .........(((.(((------((((((...(((.........(((.((((((((...........)))))))))))(((((...........)))))...))).))))).)))).))). ( -29.40) >consensus CAUAAAUAAUUCGGUG______UAGCUUUAUAAUAAACUUUUCGGAUGUAUCGCAAUAAUUAUAAAUGCGGUGCGCCGCAGAUCCAUUAAAUUUCUGCUCAAUUUAAGUUAACAUGGAAA .........(((.(((......(((((................((.(((((((((...........)))))))))))(((((...........)))))........))))).))).))). (-21.90 = -22.57 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:12 2006